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BaseInfo

ncRNA ID	novel_zma_miR2146
Species	Zea mays
Class	miRNA
Genome position	Chr2:27177898-27178011 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	22
Mature sequence(if miRNA)	1 - UGACACUCGGCAAAGACUCUCU - 22
Stem-loop(if miRNA)	C U GU                 A    CUA     A          UAU   GGU  G G  UCUUUGCCGAGUGUCAG GCCA   CACUC GCAAAGAACC   ACC   G  | |  ||||||||||||||||| ||||   ||||| ||||||||||   |||  C C  AGAAACGGCUCACAGUC CGGU   GUGAG CGUUUCUUGG   UGG   C U U UC                 C    AUC     C          UUC   ACC
Stem-loop sequence	CGUGGUUCUUUGCCGAGUGUCAGAGCCACUACACUCAGCAAAGAACCUAUACCGGUGCCCAGGUCUUGGUUCUUUGCCGAGUGCUAUGGCCCUGACACUCGGCAAAGACUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:22   UCUCUC-AGAAACGGCUCACAGU   1   |*||||-|||||||||||||||| targets:62   AAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	2.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:22   UCUCUC-AGAAACGGCUCACAGU   1   |*||||-|||||||||||||||| targets:62   AAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	2.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:22   UCUCUC-AGAAACGGCUCACAGU   1   |*||||-|||||||||||||||| targets:62   AAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	2.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
EU957132.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   ||=|||*|||||||||||||=| targets:1904   AGGGAGCCUUUGCCGAGUGUUA   1925 Target Full Sequence	2.5	Zea mays clone 1583769 mRNA sequence	NA	coding protein	psRNATarget
JB167186.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   |*=|||*||||||||||||||| targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	1.0	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
HI406725.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   |*=|||*||||||||||||||| targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	1.0	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   |*=|||*||||||||||||||| targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	1.0	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget
BT067215.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   *|**|||||||||||||||||| targets:1359   CGUUAGUCUUUGCCGAGUGUCA   1380 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   *|**|||||||||||||||||| targets:1496   CGUUAGUCUUUGCCGAGUGUCA   1517 Target Full Sequence	1.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   *|**|||||||||||||||||| targets:1496   CGUUAGUCUUUGCCGAGUGUCA   1517 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
EZ114211.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   |**|||||||||||||||||== targets:329   ACCGAGUCUUUGCCGAGUGUUG   350 Target Full Sequence	2.5	TSA: Zea mays contig49872, mRNA sequence	NA	coding protein	psRNATarget
EU942524.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   |*|||*|||||||||||*|||| targets:525   AAAGACUCUUUGCCGAGCGUCA   546 Target Full Sequence	2.5	Zea mays clone 1513654 mRNA sequence	NA	coding protein	psRNATarget
EZ052892.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   =*|*||*||||||||||||||| targets:94   GCAAAGGCUUUGCCGAGUGUCA   115 Target Full Sequence	2.0	TSA: Zea mays contig54013, mRNA sequence	NA	coding protein	psRNATarget
BT042352.1	ncRNA:22   UCUCUC-AGAAACGGCUCACAGU   1   |***||-|||||||||||||||| targets:1199   AUUUAGCUCUUUGCCGAGUGUCA   1221 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:22   UCUCUC-AGAAACGGCUCACAGU   1   |***||-|||||||||||||||| targets:1249   AUUUAGCUCUUUGCCGAGUGUCA   1271 Target Full Sequence	3.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
XM_008658185.2	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   ***|=|*||||||||||||||| targets:1562   UCCGGGCCUUUGCCGAGUGUCA   1583 Target Full Sequence	2.0	PREDICTED: Zea mays putative F-box/LRR-repeat protein At3g58880 (LOC103635804), mRNA	NA	coding protein	psRNATarget
EU961427.1	ncRNA:22   UCUCUCAGAAACGGCUCACAGU   1   ||-||*|||||||||||*|||| targets:340   AG-GAUUCUUUGCCGAGAGUCA   360 Target Full Sequence	2.5	Zea mays clone 235362 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget