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BaseInfo

ncRNA ID novel_zma_miR2143
Species Zea mays
Class miRNA
Genome position Chr2:30507003-30507089 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089715;SRR2287159;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR5451006;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - AGUUGGCUCUCGGCAAAGACUGAC - 24
Stem-loop(if miRNA) --  CG          U   U   AUG   C            A
  CA  CUUUGCCGAG GCC ACU   UGG ACUCGGCAAAGA U
  ||  |||||||||| ||| |||   ||| ||||||||||||
  GU  GAAACGGCUC CGG UGA   ACC UGAGCCGUUUCU C
CA  CA          U   U   -CG   A            C
Stem-loop sequence CACGCUUUGCCGAGUGCCUACUAUGUGGCACUCGGCAAAGAAUCCUCUUUGCCGAGUACCAGCAGUUGGCUCUCGGCAAAGACUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063684.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds NA coding protein psRNATarget
NM_001175015.1
ncRNA:24   CAGUCAGAAACGGCUCUCGGUUGA   1
  |||||||||||||||||||||||*
targets:1246   GUCAGUCUUUGCCGAGAGCCAACG   1269

1.0 Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA NA coding protein psRNATarget