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BaseInfo

ncRNA ID novel_zma_miR2140
Species Zea mays
Class miRNA
Genome position Chr4:206538699-206538814 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647390
Length 24
Mature sequence(if miRNA) 93 - AUGAUCUAUGGCGCCGAGCUCUGU - 116
Stem-loop(if miRNA) --AC   G           GC  C         G AC       G   ACACAAACAG
    AGC CGGCGCCAUAG  UA GGCGCCGAG U  GUGCUAC CUG          A
    ||| |||||||||||  || ||||||||| |  ||||||| |||          C
    UCG GCCGCGGUAUC  GU CCGCGGCUC A  CACGGUG UAG          G
UGUC   A           UA  A         G CC       -   UUACGGUGCU
Stem-loop sequence ACAGCGCGGCGCCAUAGGCUACGGCGCCGAGGUACGUGCUACGCUGACACAAACAGACGUCGUGGCAUUGAUGUGGCACCCAGCUCGGCGCCAUGAUCUAUGGCGCCGAGCUCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008666663.2
ncRNA:24   UGU---CUCGAGCCGCGGUAUCUAGUA   1
  |||---|||||||||||||||||||*|
targets:777   ACAUCCGAGCUCGGCGCCAUAGAUCUU   803

1.5 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*|||||||||||||||||||*|
targets:128   ACCGAGCUCGGCGCCAUAGAUCUU   151

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGU-----CUCGAGCCGCGGUAUCUAGUA   1
  |||-----|||||||||||||||||||*|
targets:1215   ACAUAUCCGAGCUCGGCGCCAUAGAUCUU   1243

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*|||||||||||||||||||*|
targets:126   ACCGAGCUCGGCGCCAUAGAUCUU   149

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGU-----CUCGAGCCGCGGUAUCUAGUA   1
  |||-----|||||||||||||||||||*|
targets:1213   ACAUAUCCGAGCUCGGCGCCAUAGAUCUU   1241

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*|||||||||||||||||||*|
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGU-----CUCGAGCCGCGGUAUCUAGUA   1
  |||-----|||||||||||||||||||*|
targets:1272   ACAUAUCCGAGCUCGGCGCCAUAGAUCUU   1300

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*|||||||||||||||||||*|
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGU-----CUCGAGCCGCGGUAUCUAGUA   1
  |||-----|||||||||||||||||||*|
targets:1272   ACAUAUCCGAGCUCGGCGCCAUAGAUCUU   1300

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238112.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*||*||||||||||||||||*|
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.5 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
HI405982.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*||*||||||||||||||||*|
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.5 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
JB166443.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*||*||||||||||||||||*|
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.5 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:280   ACACAUCUCGGCGCCAUAGAUCUU   303

2.5 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  =|=|=|*|||||||||||||||*|
targets:181   GCGGGGGUCGGCGCCAUAGAUCUU   204

2.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695

2.5 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695

2.5 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:1754   ACACAUCUCGGCGCCAUAGAUCUU   1777

2.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:1779   ACACAUCUCGGCGCCAUAGAUCUU   1802

2.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |||*|*||||||||||||||||*|
targets:1786   ACACAUCUCGGCGCCAUAGAUCUU   1809

2.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25

2.5 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||*|=|*|||||||||||||||*|
targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312

2.5 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

2.5 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

2.5 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

2.5 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186

2.5 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186

2.5 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:228   ACGUACCUCGGCGCCAUAGAUCUU   251

2.5 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  ||=*|*||||||||||||||||*|
targets:935   ACGUACCUCGGCGCCAUAGAUCUU   958

2.5 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  |==*|*||||||||||||||||*|
targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24

2.5 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  **=|=|*|||||||||||||||*|
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

2.5 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   UGUCUCGAGCCGCGGUAUCUAGUA   1
  **=|=|*|||||||||||||||*|
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

2.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
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