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BaseInfo

ncRNA ID osa-miR438
Species Oryza sativa
Class miRNA
Genome position Chr6:20745965-20746150 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 24 - UUCCCACGCGUUAUAGUGAAA - 44
Stem-loop(if miRNA)     U UUUU   CAAACU  UUU            U                  -     UG  AUG   GUAU   --  AUUGAUAUUGGAUCU
AACG G    GGG      UG   UCCCACGCGUUA AGUGAAAACUUUUGGAAU AUGUU  UU   GGA    AUA  UU               A
|||| |    |||      ||   |||||||||||| |||||||||||||||||| |||||  ||   |||    |||  ||               G
UUGC C    CCU      AC   AGGGUGCGCAAU UCACUUUUGAAAACUUUG UACAG  GG   UUG    UGU  AA               A
    - ---U   UCAUCU  UAU            U                  G     GU  GCA   ----   GC  UAUAUUUUAAUACGA
Stem-loop sequence AACGUGUUUUGGGCAAACUUGUUUUCCCACGCGUUAUAGUGAAAACUUUUGGAAUAUGUUUGUUAUGGGAGUAUAUAUUAUUGAUAUUGGAUCUAGAAGCAUAAUUUUAUAUAACGUGUGUUACGGGUGGACAUGGUUUCAAAAGUUUUCACUUUAACGCGUGGGAUAUCAUCUACUUCCUCCGUU

Reference

1 PMID:15805478
"Cloning and characterization of microRNAs from rice";
Sunkar R, Girke T, Jain PK, Zhu JK;
Plant Cell. 17:1397-1411(2005).