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BaseInfo

ncRNA ID	novel_zma_miR2139
Species	Zea mays
Class	miRNA
Genome position	Chr5:79368251-79368308 [-]
Reference genome	RefGen_v4
Source	SRR1583941
Length	21
Mature sequence(if miRNA)	1 - UCUGGUGUUGUUGAUGAAUCU - 21
Stem-loop(if miRNA)	AUUCCAU         GU  -   ACAAC        GUCAACAAU  CA AAC     U        |||||||||  || |||        UAGUUGUUG  GU UUG     U -UCUAAG         UG  C   GCUCG
Stem-loop sequence	AUUCCAUGUCAACAAUGUCAAACACAACUUGCUCGGUUCUGGUGUUGUUGAUGAAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547367.1	ncRNA:21   UCUAAGUAGUUG-UUGUGGUCU   1   *|||||||||||-||||||||| targets:497   CGAUUCAUCAACGAACACCAGA   518 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100192027 (cl34424_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001165871.1	ncRNA:21   UCUAAGUAGUUGUUGUGGUCU   1   |||||||*||||||||||*|| targets:402   AGAUUCAGCAACAACACCUGA   422 Target Full Sequence	2.5	Zea mays Putative paramyosin (cl37738_1), mRNA	NA	coding protein	psRNATarget
XM_020540611.1	ncRNA:21   UCUAAGUAGUUGUUGUGGUCU   1   |||||||*||||||||||*|| targets:568   AGAUUCAGCAACAACACCUGA   588 Target Full Sequence	2.5	PREDICTED: Zea mays Putative paramyosin (cl37738_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653387.2	ncRNA:21   UCUAAGUAGUUGUUGUGGUCU   1   |||||||*||||||||||*|| targets:710   AGAUUCAGCAACAACACCUGA   730 Target Full Sequence	2.5	PREDICTED: Zea mays Putative paramyosin (cl37738_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU952904.1	ncRNA:21   UCUAAGUAGUUGUUGUGGUCU   1   **|||||*||||=|||||||| targets:226   CCAUUCACCAACGACACCAGA   246 Target Full Sequence	2.5	Zea mays clone 1341560 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU940911.1	ncRNA:20   CUAAGUAGUUGUUGUGGUCU   1   ||||||*||||||||||*|| targets:1   GAUUCAGCAACAACACCUGA   20 Target Full Sequence	2.5	Zea mays clone 1211102 mRNA sequence	NA	coding protein	psRNATarget