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BaseInfo

ncRNA ID novel_zma_miR2138
Species Zea mays
Class miRNA
Genome position Chr2:45202802-45202859 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089713;SRR2089704
Length 23
Mature sequence(if miRNA) 36 - CAGCGGGUUUGUGGGUACGGGUU - 58
Stem-loop(if miRNA) -CA       UG     AC    -    U
   GCGGGUU  UGGGU  GGGU UUGU C
   |||||||  |||||  |||| ||||
   UGCCCAA  GCCCA  CCCA GAUA C
GGG       GU     AA    U    U
Stem-loop sequence CAGCGGGUUUGUGGGUACGGGUUUGUUCCUAUAGUACCCAAACCCGUGAACCCGUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069414.2
ncRNA:23   UUGGGCAUGGGUGUUUGGGCGAC   1
  ||||||||||||=||||||||||
targets:183   AACCCGUACCCAUAAACCCGCUG   205

1.5 Zea mays full-length cDNA clone ZM_BFb0118M13 mRNA, complete cds NA coding protein psRNATarget
XM_008667001.2
ncRNA:23   UUGGGCAUGGGUGUUUGGGCGAC   1
  ||||||||||||=||||||||||
targets:14   AACCCGUACCCAUAAACCCGCUG   36

1.5 PREDICTED: Zea mays histone H3.v1 (LOC103643837), mRNA NA coding protein psRNATarget