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BaseInfo

ncRNA ID novel_zma_miR2132
Species Zea mays
Class miRNA
Genome position Chr4:202068215-202068262 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AAGUUGUAGAUCUAUAAAAGUUAU - 24
Stem-loop(if miRNA) --       A  U       A   A
  AAGUUGU GA CUAUAAA GUU U
  ||||||| || ||||||| |||
  UUCAACA UU GAUGUUU CAA A
UU       A  -       -   A
Stem-loop sequence AAGUUGUAGAUCUAUAAAAGUUAUAAAACUUUGUAGUUAACAACUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645203.2
ncRNA:24   UAUUGAAAAUAUCUAGAUGUUGAA   1
  |||||||||**|||||||||||||
targets:3672   AUAACUUUUCAAGAUCUACAACUU   3695

2.0 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553261.1
ncRNA:24   UAUUGAAAAUAUCUAGAUGUUGAA   1
  |||||||||**|||||||||||||
targets:3611   AUAACUUUUCAAGAUCUACAACUU   3634

2.0 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008645204.2
ncRNA:24   UAUUGAAAAUAUCUAGAUGUUGAA   1
  |||||||||**|||||||||||||
targets:3604   AUAACUUUUCAAGAUCUACAACUU   3627

2.0 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA NA coding protein psRNATarget