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BaseInfo

ncRNA ID	osa-miR5829
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:20149367-20149561 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AUCAGGACCAGUAGGCGAUGGUAA - 34
Stem-loop(if miRNA)	AAUUA     AC      -    -    -AAUG     G  U UUCUUC    AUGUCAAUAGGAUGUGCAUAGGUAGACACAUCAUUCAAUCCU GAGAGC     UCAGG  CAGUAG GCGA UGGU     UGUCA AG C      AACA                                          U ||||||     |||||  |||||| |||| ||||     ||||| || |      ||||                                          C UUCUCG     AGUCC  GUCAUU UGCU ACCG     ACGGU UC G      UCGU                                          A       AAAAG     --      A    U    AGAGA     A  U -----A    UUGUACGACGCUGUAACUAUUGUUUAGACCAUCAUCACUGGU
Stem-loop sequence	GAGAGCAAUUAUCAGGACCAGUAGGCGAUGGUAAUGUGUCAGAGUCUUCUUCAACAAUGUCAAUAGGAUGUGCAUAGGUAGACACAUCAUUCAAUCCUUCAUGGUCACUACUACCAGAUUUGUUAUCAAUGUCGCAGCAUGUUUGCUAGUCUAUGGCAAGAGAGCCAUUCGUAUUACUGCCUGAGAAAAGCUCUU

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).