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BaseInfo

ncRNA ID ath-miRf10029-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - CUACUCGACCUCUGGGUCGAAUG - NA
Stem-loop(if miRNA)       UCUU   C      UG            -U UC UG G
GUGAUG    CUA UCGACC  GGGGUCGAGUGG  G  U  A A
||||||    ||| ||||||  ||||||||||||  |  |  |
UACUGU    GGU AGCUGG  CUCCAGCUCAUC  C  A  U U
      --UU   A      GU            UU GA GU C
Stem-loop sequence GUGAUGUCUUCUACUCGACCUGGGGGUCGAGUGGUGUCUUGAGAUCUUGAAGCUUCUACUCGACCUCUGGGUCGAAUGGUUUGUCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:23   GUAAGCUGGGUCUCCAGCUCAUC   1
  ||*||||||||||||||||||||
targets:764   CACUCGACCCAGAGGUCGAGUAG   786

0.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:23   GUAAGCUGGGUCUCCAGCUCAUC   1
  ||*||||||**||||||||||||
targets:1527   CACUCGACCACGAGGUCGAGUAG   1549

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:23   GUAAGCUGGGUCUCCAGCUCAUC   1
  ||*||*|||=||||||||||||*
targets:927   CACUCUACCUAGAGGUCGAGUAU   949

3.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183194.1
ncRNA:23   GUAAGCUGGGUCUCCAGCUCAUC   1
  ||*||*|||*||||||||||||*
targets:576   CACUCUACCAAGAGGUCGAGUAU   598

3.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget