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BaseInfo

ncRNA ID	novel_zma_miR2129
Species	Zea mays
Class	miRNA
Genome position	Chr10:103253570-103253762 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - GGGACAUGAGCUAAAUUUUAGCGG - 24
Stem-loop(if miRNA)	--             C  G   A       C      -     AAAUAG   U  -  -- AUA   AC   ACCAACUGGACUAGAUUCGUCUCGUCUUUUA   GCUAAAGUUUAGC CG GUC CAUCAAG GUUUGA CUUUU      GAG AU GA  A   UAG  CCA                               A   ||||||||||||| || ||| ||||||| |||||| |||||      ||| || ||  |   |||  |||   CGAUUUUAAAUCG GU CAG GUAGUUU CAAACU GGAAG      AAG CC AU  U   UUA  AUC                               U GG             A  A   G       A      U     ----CA   -  C  AA ---   -C   AGCCUAAUAUUUUGAUUAAACAGUCGGCUUC
Stem-loop sequence	GCUAAAGUUUAGCCCGGGUCACAUCAAGCGUUUGACUUUUAAAUAGGAGUAUGAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGAAACGAAGGUUCAAACAUUUGAUGGGACAUGAGCUAAAUUUUAGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT016545.1	ncRNA:24   GG--CGAUUUUAAAUCGAGUACAGGG   1   ||--||||||=|||||=||||||||| targets:1245   CCUAGCUAAAGUUUAGUUCAUGUCCC   1270 Target Full Sequence	2.5	Zea mays clone Contig378 mRNA sequence	NA	coding protein	psRNATarget
AY104944.1	ncRNA:24   GG--CGAUUUUAAAUCGAGUACAGGG   1   ||--||||||=|||||=||||||||| targets:1632   CCUAGCUAAAGUUUAGUUCAUGUCCC   1657 Target Full Sequence	2.5	Zea mays PCO123267 mRNA sequence	NA	coding protein	psRNATarget
EU972939.1	ncRNA:24   GG--CGAUUUUAAAUCGAGUACAGGG   1   ||--||||||=|||||=||||||||| targets:2072   CCUAGCUAAAGUUUAGUUCAUGUCCC   2097 Target Full Sequence	2.5	Zea mays clone 390399 heat shock protein STI mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158460.1	ncRNA:24   GG--CGAUUUUAAAUCGAGUACAGGG   1   ||--||||||=|||||=||||||||| targets:2072   CCUAGCUAAAGUUUAGUUCAUGUCCC   2097 Target Full Sequence	2.5	Zea mays uncharacterized LOC100285569 (pco123267), mRNA	NA	coding protein	psRNATarget