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BaseInfo

ncRNA ID novel_zma_miR2121
Species Zea mays
Class miRNA
Genome position Chr4:194477570-194477704 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 23
Mature sequence(if miRNA) 113 - AAUUCUAUUUUAGUCCCUAAAUU - 135
Stem-loop(if miRNA) --                    AAAAUU                                     A U
  UUUAGGGACUAAAAUGGAAU      GAGGGACUAAAAAUUAGUCUCUAGAAACCAAACACCC C U
  ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| |
  AAAUCCCUGAUUUUAUCUUA      CUCCCUGAUUUUUAAUCAGAGAUCUUUGGUUUGUGGG G A
UU                    AUUCAC                                     - G
Stem-loop sequence UUUAGGGACUAAAAUGGAAUAAAAUUGAGGGACUAAAAAUUAGUCUCUAGAAACCAAACACCCACUUAGGGGGUGUUUGGUUUCUAGAGACUAAUUUUUAGUCCCUCCACUUAAUUCUAUUUUAGUCCCUAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403338.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUU   98

1.5 Sequence 1463 from Patent EP2074227 NA coding protein psRNATarget
JB163799.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUU   98

1.5 Sequence 1463 from Patent EP2559767 NA coding protein psRNATarget
LQ235468.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=|||||
targets:76   AAUUUAGGGACUAAAAUGGAAUU   98

1.5 Sequence 1463 from Patent EP2985353 NA coding protein psRNATarget
LQ235124.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||||||||||||||||||*
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
HI402994.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||||||||||||||||||*
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||||||||||||||||||*
targets:110   AAUUUAGGGACUAAAAUAGAAUA   132

1.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
EU967664.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:1207   AAUUUAGGGACUAAAAUGGAAUA   1229

2.5 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:1207   AAUUUAGGGACUAAAAUGGAAUA   1229

2.5 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
LQ235528.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2985353 NA coding protein psRNATarget
JB163859.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2559767 NA coding protein psRNATarget
JB163797.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUG   98

2.5 Sequence 1461 from Patent EP2559767 NA coding protein psRNATarget
HI403345.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2074227 NA coding protein psRNATarget
JB163779.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2559767 NA coding protein psRNATarget
JB163803.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2559767 NA coding protein psRNATarget
LQ235448.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2985353 NA coding protein psRNATarget
JB163910.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2559767 NA coding protein psRNATarget
JB163694.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2559767 NA coding protein psRNATarget
HI403233.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2074227 NA coding protein psRNATarget
LQ235472.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2985353 NA coding protein psRNATarget
HI403449.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2074227 NA coding protein psRNATarget
HI403268.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2074227 NA coding protein psRNATarget
HI403318.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1443 from Patent EP2074227 NA coding protein psRNATarget
JB163806.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2559767 NA coding protein psRNATarget
LQ235398.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2985353 NA coding protein psRNATarget
JB163861.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2559767 NA coding protein psRNATarget
HI403342.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1467 from Patent EP2074227 NA coding protein psRNATarget
LQ235579.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1574 from Patent EP2985353 NA coding protein psRNATarget
LQ235466.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUG   98

2.5 Sequence 1461 from Patent EP2985353 NA coding protein psRNATarget
HI403336.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUG   98

2.5 Sequence 1461 from Patent EP2074227 NA coding protein psRNATarget
LQ235441.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2985353 NA coding protein psRNATarget
HI403398.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1523 from Patent EP2074227 NA coding protein psRNATarget
LQ235475.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1470 from Patent EP2985353 NA coding protein psRNATarget
LQ235363.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1358 from Patent EP2985353 NA coding protein psRNATarget
JB163772.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2559767 NA coding protein psRNATarget
JB163729.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1393 from Patent EP2559767 NA coding protein psRNATarget
LQ235530.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2985353 NA coding protein psRNATarget
HI403311.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1436 from Patent EP2074227 NA coding protein psRNATarget
HI403400.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:76   AAUUUAGGGACUAAAAUGGAAUA   98

2.5 Sequence 1525 from Patent EP2074227 NA coding protein psRNATarget
JB163700.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2559767 NA coding protein psRNATarget
HI403239.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2074227 NA coding protein psRNATarget
LQ235369.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:60   AAUUUAGGGACUAAAAUGGAAUA   82

2.5 Sequence 1364 from Patent EP2985353 NA coding protein psRNATarget
LQ235433.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2985353 NA coding protein psRNATarget
HI403303.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2074227 NA coding protein psRNATarget
JB163764.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:58   AAUUUAGGGACUAAAAUGGAAUA   80

2.5 Sequence 1428 from Patent EP2559767 NA coding protein psRNATarget
HI403330.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2074227 NA coding protein psRNATarget
LQ235460.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2985353 NA coding protein psRNATarget
JB163791.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||||||||||||=||||*
targets:57   AAUUUAGGGACUAAAAUGGAAUA   79

2.5 Sequence 1455 from Patent EP2559767 NA coding protein psRNATarget
BT083561.2
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||||||||*|||||||||*
targets:285   AAUUUAGGGACUUAAAUAGAAUA   307

2.5 Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||*||||||||||*|||||||*
targets:2162   AAUCUAGGGACUAAUAUAGAAUA   2184

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||*||||||||||*|||||||*
targets:2162   AAUCUAGGGACUAAUAUAGAAUA   2184

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
XM_008680551.2
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||*||*|||||||||||||*
targets:919   AAUUUUGGAACUAAAAUAGAAUA   941

3.0 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||**||||||||||||||*
targets:152   AAUUUAUAGACUAAAAUAGAAUA   174

3.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
HI403351.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:77   AAUUUAUGAACUAAAAUAGAAUA   99

3.0 Sequence 1476 from Patent EP2074227 NA coding protein psRNATarget
JB163812.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:77   AAUUUAUGAACUAAAAUAGAAUA   99

3.0 Sequence 1476 from Patent EP2559767 NA coding protein psRNATarget
LQ235481.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:77   AAUUUAUGAACUAAAAUAGAAUA   99

3.0 Sequence 1476 from Patent EP2985353 NA coding protein psRNATarget
LQ235549.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
HI403448.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:76   AAUUUAUGAACUAAAAUAGAAUA   98

3.0 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
JB163909.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:76   AAUUUAUGAACUAAAAUAGAAUA   98

3.0 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
JB163880.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
HI403419.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
HI403309.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
LQ235439.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
LQ235578.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  ||||||*|*|||||||||||||*
targets:76   AAUUUAUGAACUAAAAUAGAAUA   98

3.0 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
JB163770.1
ncRNA:23   UUAAAUCCCUGAUUUUAUCUUAA   1
  |||||||**|||||||||||||*
targets:76   AAUUUAGAAACUAAAAUAGAAUA   98

3.0 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
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