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BaseInfo

ncRNA ID novel_zma_miR2120
Species Zea mays
Class miRNA
Genome position Chr2:198685229-198685307 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - AAAUAGUGGGCACUCGGCAAAGGA - 24
Stem-loop(if miRNA) --          A   G G    -              AG
  CUUUGCCGAG GCC A UGUU GGCACUCGGCAAAG  U
  |||||||||| ||| | |||| ||||||||||||||
  GAAACGGCUC CGG U AUAA CCGUGAGCCGUUUC  C
AG          A   G G    A              UU
Stem-loop sequence CUUUGCCGAGAGCCGAGUGUUGGCACUCGGCAAAGAGUCUUCUUUGCCGAGUGCCAAAUAGUGGGCACUCGGCAAAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU941594.1
ncRNA:24   AGGAAACGGCUCACGGGUGAUAAA   1
  |*|||||**|||||||||||||||
targets:511   UACUUUGAGGAGUGCCCACUAUUU   534

2.0 Zea mays clone 1465486 mRNA sequence NA coding protein psRNATarget
XM_008664807.1
ncRNA:24   AGGAAACGGCUCACGGGUGAUAAA   1
  |*|||||**|||||||||||||||
targets:868   UACUUUGAGGAGUGCCCACUAUUU   891

2.0 PREDICTED: Zea mays uncharacterized LOC103641465 (LOC103641465), transcript variant X1, mRNA NA coding protein psRNATarget