Search result

BaseInfo

ncRNA ID novel_zma_miR2118
Species Zea mays
Class miRNA
Genome position Chr4:194307103-194307179 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 54 - AUAAUCUGGGUAUAUUAUAAUUCC - 77
Stem-loop(if miRNA) --         C GU              ----    AUU
  GAUUAUAAU U  CCAGAUUAUAUAAU    GAGU   A
  ||||||||| |  ||||||||||||||    ||||   G
  UUAAUAUUA A  GGUCUAAUAUAUUA    UUCA   U
CC         U UG              GGUU    AUU
Stem-loop sequence GAUUAUAAUCUGUCCAGAUUAUAUAAUGAGUAUUAGUUUAACUUUUGGAUUAUAUAAUCUGGGUAUAUUAUAAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548752.1
ncRNA:24   CCUUAAUAUUAUAUGGGUCUAAUA   1
  ||=||||||||*||||||||||||
targets:27   GGGAUUAUAAUCUACCCAGAUUAU   50

1.5 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939242), mRNA NA coding protein psRNATarget
BT069856.2
ncRNA:24   CCUUAAUAUUAUAUGGGUCUAAUA   1
  **=||||||||*||||||||||||
targets:627   CAGAUUAUAAUCUACCCAGAUUAU   650

1.5 Zea mays full-length cDNA clone ZM_BFb0305N24 mRNA, complete cds NA coding protein psRNATarget