Search result

BaseInfo

ncRNA ID novel_zma_miR2117
Species Zea mays
Class miRNA
Genome position Chr2:204889944-204890000 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 34 - AUUUCGUUUUAAUUGUCGCUGGAU - 57
Stem-loop(if miRNA) --     G     A              
  AUUUC UUUUA UUGUCGCUGGAUAGU
  ||||| ||||| ||||||||||||||A
  UAAAG AAAAU AACAGCGACCUAUCA
GU     A     C              
Stem-loop sequence AUUUCGUUUUAAUUGUCGCUGGAUAGUAACUAUCCAGCGACAACUAAAAAGAAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656166.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1316   AUCCAGCGACAAUUAAAACGAAAC   1339

1.0 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1452   AUCCAGCGACAAUUAAAACGAAAC   1475

1.0 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1452   AUCCAGCGACAAUUAAAACGAAAC   1475

1.0 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656167.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1271   AUCCAGCGACAAUUAAAACGAAAC   1294

1.0 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
BT088158.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1252   AUCCAGCGACAAUUAAAACGAAAC   1275

1.0 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
EU973028.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1218   AUCCAGCGACAAUUAAAACGAAAC   1241

1.0 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1112   AUCCAGCGACAAUUAAAACGAAAC   1135

1.0 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
BT068381.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:1159   AUCCAGCGACAAUUAAAACGAAAC   1182

1.0 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
LQ241224.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:51   AUCCAGCGACAAUUAAAACGAAAC   74

1.0 Sequence 7219 from Patent EP2985353 NA coding protein psRNATarget
HI409094.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:51   AUCCAGCGACAAUUAAAACGAAAC   74

1.0 Sequence 7219 from Patent EP2074227 NA coding protein psRNATarget
JB169555.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||||||||||||||||||||*
targets:51   AUCCAGCGACAAUUAAAACGAAAC   74

1.0 Sequence 7219 from Patent EP2559767 NA coding protein psRNATarget
XM_020546693.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2207   AUCCAGCGACAACUAAAACGAAAC   2230

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020546692.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020547478.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547479.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:3231   AUCCAGCGACAACUAAAACGAAAC   3254

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546684.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2308   AUCCAGCGACAACUAAAACGAAAC   2331

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546683.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2283   AUCCAGCGACAACUAAAACGAAAC   2306

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546689.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2228   AUCCAGCGACAACUAAAACGAAAC   2251

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546691.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546686.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546687.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546685.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2290   AUCCAGCGACAACUAAAACGAAAC   2313

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546694.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA NA coding protein psRNATarget
XM_008666445.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020546695.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2269   AUCCAGCGACAACUAAAACGAAAC   2292

2.5 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008669138.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2853   AUCCAGCGACAACUAAAACGAAAC   2876

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008669142.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2721   AUCCAGCGACAACUAAAACGAAAC   2744

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008669143.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2791   AUCCAGCGACAACUAAAACGAAAC   2814

2.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020552423.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:306   AUCCAGCGACAAAUAAAACGAAAC   329

2.5 PREDICTED: Zea mays kinesin-like protein KIN-14O (LOC103652735), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:1502   AUCCAGCGACAACUAAAACGAAAC   1525

2.5 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008679695.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:307   AUCCAGCGACAAAUAAAACGAAAC   330

2.5 PREDICTED: Zea mays kinesin-like protein KIN-14O (LOC103652735), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008677351.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:2107   AUCCAGCGACAACUAAAACGAAAC   2130

2.5 PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA NA coding protein psRNATarget
XM_008655254.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:1098   AUCCAGCGACAACUAAAACGAAAC   1121

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541157.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:1079   AUCCAGCGACAACUAAAACGAAAC   1102

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541158.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:1077   AUCCAGCGACAACUAAAACGAAAC   1100

2.5 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA NA coding protein psRNATarget
BT065083.2
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:256   AUCCAGCGACAACUAAAACGAAAC   279

2.5 Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds NA coding protein psRNATarget
BT036723.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:746   AUCCAGCGACAACUAAAACGAAAA   769

2.5 Zea mays full-length cDNA clone ZM_BFb0133L19 mRNA, complete cds NA coding protein psRNATarget
EU944684.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:751   AUCCAGCGACAACUAAAACGAAAC   774

2.5 Zea mays clone 226132 mRNA sequence NA coding protein psRNATarget
EU952378.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:763   AUCCAGCGACAACUAAAACGAAAC   786

2.5 Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EZ112557.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:98   AUCCAGCGACAACUAAAACGAAAC   121

2.5 TSA: Zea mays contig48218, mRNA sequence NA coding protein psRNATarget
LQ240728.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2985353 NA coding protein psRNATarget
HI408598.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2074227 NA coding protein psRNATarget
JB169059.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:55   AUCCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 6723 from Patent EP2559767 NA coding protein psRNATarget
JB163549.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2559767 NA coding protein psRNATarget
HI403088.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2074227 NA coding protein psRNATarget
LQ235218.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||||||||||||*||||||||||*
targets:43   AUCCAGCGACAACUAAAACGAAAC   66

2.5 Sequence 1213 from Patent EP2985353 NA coding protein psRNATarget
LQ239400.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2985353 NA coding protein psRNATarget
JB167731.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2559767 NA coding protein psRNATarget
HI407270.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:56   AUUCAGCGACAACUAAAACGAAAC   79

2.5 Sequence 5395 from Patent EP2074227 NA coding protein psRNATarget
HI407229.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2074227 NA coding protein psRNATarget
JB167690.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2559767 NA coding protein psRNATarget
LQ239359.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:55   AUUCAGCGACAACUAAAACGAAAC   78

2.5 Sequence 5354 from Patent EP2985353 NA coding protein psRNATarget
HI409328.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:54   AUUCAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
JB169789.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:54   AUUCAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
LQ241458.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||=|||||||||*||||||||||*
targets:54   AUUCAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
LQ235529.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||*||||||*|||||||||||
targets:61   AUCCACCGACAACUAAAACGAAAU   84

2.5 Sequence 1524 from Patent EP2985353 NA coding protein psRNATarget
JB163860.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||*||||||*|||||||||||
targets:61   AUCCACCGACAACUAAAACGAAAU   84

2.5 Sequence 1524 from Patent EP2559767 NA coding protein psRNATarget
HI403399.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  |||||*||||||*|||||||||||
targets:61   AUCCACCGACAACUAAAACGAAAU   84

2.5 Sequence 1524 from Patent EP2074227 NA coding protein psRNATarget
NM_001305845.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:2270   AUUUAGCGACAACUAAAACGAAAC   2293

2.5 Zea mays uncharacterized LOC542022 (LOC542022), mRNA NA coding protein psRNATarget
HI405858.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2074227 NA coding protein psRNATarget
LQ237988.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2985353 NA coding protein psRNATarget
JB166319.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:58   AUUUAGCGACAACUAAAACGAAAC   81

2.5 Sequence 3983 from Patent EP2559767 NA coding protein psRNATarget
HI410196.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
JB170657.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
LQ240840.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
JB169171.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
LQ242326.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
HI408710.1
ncRNA:24   UAGGUCGCUGUUAAUUUUGCUUUA   1
  ||==||||||||*||||||||||*
targets:54   AUUUAGCGACAAAUAAAACGAAAC   77

2.5 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.