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BaseInfo

ncRNA ID	novel_zma_miR2116
Species	Zea mays
Class	miRNA
Genome position	Chr2:210630732-210630827 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	73 - GGCGCGGGACGAACACGAAGGCAG - 96
Stem-loop(if miRNA)	--        -A   A A      ----------CAGC   AUUCCCACCUCU   GGCGCGGG  CGA C CGAAGG              GGG            C   ||||||||  ||| | ||||||              |||            U   UCGCGCUC  GCU G GCUUCC              CGG            C GC        CG   C C      CCCUUUCACUCCGC   CCUCUGGCCGCA
Stem-loop sequence	GGCGCGGGACGAACACGAAGGCAGCGGGAUUCCCACCUCUCUCACGCCGGUCUCCGGCCGCCUCACUUUCCCCCUUCGCGCUCGGCCUCGCGCUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170396.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:76   CGGCCUUCGUGUUCGUCCCGCGCC   99 Target Full Sequence	0.0	Sequence 8060 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242065.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:76   CGGCCUUCGUGUUCGUCCCGCGCC   99 Target Full Sequence	0.0	Sequence 8060 from Patent EP2985353	NA	coding protein	psRNATarget
HI409935.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:76   CGGCCUUCGUGUUCGUCCCGCGCC   99 Target Full Sequence	0.0	Sequence 8060 from Patent EP2074227	NA	coding protein	psRNATarget
BT036940.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:999   CGGCCUUCGUGUUCGUCCCGCGCC   1022 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0148D20 mRNA, complete cds	NA	coding protein	psRNATarget
BT054635.2	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:16   CGGCCUUCGUGUUCGUCCCGCGCC   39 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0017I20 mRNA, complete cds	NA	coding protein	psRNATarget
EU940966.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:709   CGGCCUUCGUGUUCGUCCCGCGCC   732 Target Full Sequence	0.0	Zea mays clone 1223688 mRNA sequence	NA	coding protein	psRNATarget
EU952144.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||||||||||||| targets:1415   CGGCCUUCGUGUUCGUCCCGCGCC   1438 Target Full Sequence	0.0	Zea mays clone 1212406 mRNA sequence	NA	coding protein	psRNATarget
JB169997.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:8   CGGCCUUCGUGUUUGUCCCGCGCC   31 Target Full Sequence	1.5	Sequence 7661 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241666.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:8   CGGCCUUCGUGUUUGUCCCGCGCC   31 Target Full Sequence	1.5	Sequence 7661 from Patent EP2985353	NA	coding protein	psRNATarget
HI409536.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:8   CGGCCUUCGUGUUUGUCCCGCGCC   31 Target Full Sequence	1.5	Sequence 7661 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001138227.2	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:1148   CGGCCUUCGUGUUUGUCCCGCGCC   1171 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
BT035216.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:1153   CGGCCUUCGUGUUUGUCCCGCGCC   1176 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0046F04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138227.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*|||||||||||=|||||||||| targets:1153   CGGCCUUCGUGUUUGUCCCGCGCC   1176 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
JB170277.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |**||||||||||||||||||||| targets:77   CGACCUUCGUGUUCGUCCCGCGCC   100 Target Full Sequence	0.0	Sequence 7941 from Patent EP2559767	NA	coding protein	psRNATarget
HI409816.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |**||||||||||||||||||||| targets:77   CGACCUUCGUGUUCGUCCCGCGCC   100 Target Full Sequence	0.0	Sequence 7941 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241946.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |**||||||||||||||||||||| targets:77   CGACCUUCGUGUUCGUCCCGCGCC   100 Target Full Sequence	0.0	Sequence 7941 from Patent EP2985353	NA	coding protein	psRNATarget
EZ072125.1	ncRNA:24   GACGGAAGCACAAGCAGGGCGCGG   1   |*||||||*||||||||||||||| targets:73   CGGCCUUCAUGUUCGUCCCGCGCC   96 Target Full Sequence	1.0	TSA: Zea mays contig07762, mRNA sequence	NA	coding protein	psRNATarget