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BaseInfo

ncRNA ID	novel_zma_miR2112
Species	Zea mays
Class	miRNA
Genome position	Chr2:239278337-239278544 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR2287161;SRR2089700;SRR2089701;SRR2089704
Length	21
Mature sequence(if miRNA)	188 - GCUUGCACAGAAUGACUGCUU - 208
Stem-loop(if miRNA)	--A     UU               G           CC      C      AC    C   UA     -   A   UAGUUUGUUAGG      UUAUAAAGAUUAUU    CAGUC  UUCUGUGCAAGCGUG AAGCAAAUCAU  GAUUUA UAGAUU  GAUC AAC  UAGAU ACA UCA            GGUUUU              G    |||||  ||||||||||||||| |||||||||||  |||||| ||||||  |||| |||  ||||| ||| |||            ||||||              A    GUCAG  AAGACACGUUCGUAC UUUGUUUAGUA  CUAAGU AUCUAG  CUAG UUG  AUCUA UGU AGU            AAUUUG              G UUC     -U               G           AA      A      CA    A   GC     G   A   ---------UAG      GGAACGUGGUGGUC
Stem-loop sequence	ACAGUCUUUUCUGUGCAAGCGUGGAAGCAAAUCAUCCGAUUUACUAGAUUACGAUCCAACUAUAGAUACAAUCAUAGUUUGUUAGGGGUUUUUUAUAAAGAUUAUUGAGCUGGUGGUGCAAGGGUUUAAGAUUGAAUGUGAUCUACGGUUAGAUCACGAUCUAAUGAAUCAAAUGAUUUGUUUGCAUGCUUGCACAGAAUGACUGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235586.1	ncRNA:21   UUCGUCAGUAAGAC-ACGUUCG   1   ||||||||||||||-||||||| targets:6   AAGCAGUCAUUCUGGUGCAAGC   27 Target Full Sequence	3.0	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
JB163917.1	ncRNA:21   UUCGUCAGUAAGAC-ACGUUCG   1   ||||||||||||||-||||||| targets:6   AAGCAGUCAUUCUGGUGCAAGC   27 Target Full Sequence	3.0	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
HI403456.1	ncRNA:21   UUCGUCAGUAAGAC-ACGUUCG   1   ||||||||||||||-||||||| targets:6   AAGCAGUCAUUCUGGUGCAAGC   27 Target Full Sequence	3.0	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
HI403381.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1506 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235511.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1506 from Patent EP2985353	NA	coding protein	psRNATarget
JB163842.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1506 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
HI403395.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163856.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:6   AAGCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	1.5	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
HI403099.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||*||||||||||||||| targets:14   AAGCAAUCAUUCUGUGCAAGC   34 Target Full Sequence	1.0	Sequence 1224 from Patent EP2074227	NA	coding protein	psRNATarget
JB163560.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||*||||||||||||||| targets:14   AAGCAAUCAUUCUGUGCAAGC   34 Target Full Sequence	1.0	Sequence 1224 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235229.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||*||||||||||||||| targets:14   AAGCAAUCAUUCUGUGCAAGC   34 Target Full Sequence	1.0	Sequence 1224 from Patent EP2985353	NA	coding protein	psRNATarget
HI403003.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1128 from Patent EP2074227	NA	coding protein	psRNATarget
JB163608.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1272 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
JB163464.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1128 from Patent EP2559767	NA	coding protein	psRNATarget
HI403187.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235277.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1272 from Patent EP2985353	NA	coding protein	psRNATarget
JB163648.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
HI403147.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1272 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235133.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 1128 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241182.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 7177 from Patent EP2985353	NA	coding protein	psRNATarget
HI409052.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 7177 from Patent EP2074227	NA	coding protein	psRNATarget
JB169513.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:14   AAGCAGUCCUUCUGUGCAAGC   34 Target Full Sequence	1.5	Sequence 7177 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680394.2	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:100   AAGCAGUCCUUCUGUGCAAGC   120 Target Full Sequence	1.5	PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA	NA	coding protein	psRNATarget
BT066599.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:648   AAGCAGUCCUUCUGUGCAAGC   668 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds	NA	coding protein	psRNATarget
EU972964.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:2039   AAGCAGUCCUUCUGUGCAAGC   2059 Target Full Sequence	1.5	Zea mays clone 390894 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151629.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||||||||*|||||||||||| targets:2039   AAGCAGUCCUUCUGUGCAAGC   2059 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278316 (si946092e03), mRNA	NA	coding protein	psRNATarget
JB163805.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AACCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1469 from Patent EP2559767	NA	coding protein	psRNATarget
HI403344.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AACCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1469 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235474.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AACCAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1469 from Patent EP2985353	NA	coding protein	psRNATarget
HI403273.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1398 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235403.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1398 from Patent EP2985353	NA	coding protein	psRNATarget
JB163734.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1398 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235447.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
HI403317.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
JB163778.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   ||*|||||*|||||||||||| targets:6   AAACAGUCCUUCUGUGCAAGC   26 Target Full Sequence	2.5	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||||**|||||||||||| targets:1659   AAGCAGUGCUUCUGUGCAAGC   1679 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||||**|||||||||||| targets:807   AAGCAGUGUUUCUGUGCAAGC   827 Target Full Sequence	2.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:21   UUCGUCAGUAAGACACGUUCG   1   |||||||**|||||||||||| targets:807   AAGCAGUGUUUCUGUGCAAGC   827 Target Full Sequence	2.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget