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BaseInfo

ncRNA ID	novel_zma_miR2109
Species	Zea mays
Class	miRNA
Genome position	Chr10:115007047-115007253 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2287160;SRR2089705;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GCACGGUUGCACGGAGGAGUUGGU - 24
Stem-loop(if miRNA)	--    C                                   A               A  A         C GA     -  --GA        AAAAA  G  AUU   CAAC CCUCCGUGCAACCGUGCAAACUUCUAAUCUGAACC CAUGAUGUUGAUCCA GG GACGUGUGG G  GUGGG AG    GGAUUUGA     GU UG   A   |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |  ||||| ||    ||||||||     || ||   GUUG GGAGGCACGUUGGCACGUUUGAAGAUUAGACUUGG GUACUACAACUAGGU CC CUGCGUACC C  CACCU UU    UCUGAAUU     CG GC   G UG    A                                   A               A  -         - -G     A  AAAA        ---GG  G  GAC
Stem-loop sequence	CAACCCCUCCGUGCAACCGUGCAAACUUCUAAUCUGAACCACAUGAUGUUGAUCCAAGGAGACGUGUGGCGGAGUGGGAGGAGGAUUUGAAAAAAGUGUGAUUAGCAGCGGGCGGUUAAGUCUAAAAUUAUCCACGCCCAUGCGUCCCAUGGAUCAACAUCAUGAGGUUCAGAUUAGAAGUUUGCACGGUUGCACGGAGGAGUUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676928.2	ncRNA:24   UGGUUGAGGAGGCACGUUGGCACG   1   ||||||||||||||||||||*||| targets:2793   ACCAACUCCUCCGUGCAACCAUGC   2816 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g09650, chloroplastic (LOC103651307), mRNA	NA	coding protein	psRNATarget
EU950284.1	ncRNA:21   UUGAGGAGGCACGUUGGCACG   1   ||*||||||||||=||||||| targets:1   AAAUCCUCCGUGCGACCGUGC   21 Target Full Sequence	2.5	Zea mays clone 485395 mRNA sequence	NA	coding protein	psRNATarget
AY108886.1	ncRNA:24   UGGU-UGAGGAGGCACGUUGGCACG   1   *|==-||||||||||||||||*||= targets:490   CCUGUACUCCUCCGUGCAACCUUGU   514 Target Full Sequence	2.5	Zea mays PCO075085 mRNA sequence	NA	coding protein	psRNATarget
BT066824.1	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:83   UCC--CUCCUCCGUGCAACCUGUGC   105 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0075F09 mRNA, complete cds	NA	coding protein	psRNATarget
BT034091.1	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:68   UCC--CUCCUCCGUGCAACCUGUGC   90 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0032C19 mRNA, complete cds	NA	coding protein	psRNATarget
BT035045.1	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:89   UCC--CUCCUCCGUGCAACCUGUGC   111 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0034F22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659854.2	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:156   UCC--CUCCUCCGUGCAACCUGUGC   178 Target Full Sequence	3.0	PREDICTED: Zea mays Ninja-family protein 1 (pco114261a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138112.1	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:137   UCC--CUCCUCCGUGCAACCUGUGC   159 Target Full Sequence	3.0	Zea mays Ninja-family protein 1 (pco114261a), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU966492.1	ncRNA:24   UGGUUGAGGAGGCACGUUGG-CACG   1   *||--|||||||||||||||-|||| targets:137   UCC--CUCCUCCGUGCAACCUGUGC   159 Target Full Sequence	3.0	Zea mays clone 294866 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget