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BaseInfo

ncRNA ID	novel_zma_miR2102
Species	Zea mays
Class	miRNA
Genome position	Chr4:172886689-172886769 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR1583942
Length	24
Mature sequence(if miRNA)	58 - CUCUUAGAUUUCUACACAUAGUGU - 81
Stem-loop(if miRNA)	--          C   C        U C  -AU     - U   GCUAUGUGUA AAA CUAAGAGA C AC   UGAAA C C   |||||||||| ||| |||||||| | ||   ||||| | U   UGAUACACAU UUU GAUUCUCU G UG   ACUUU G A UG          C   A        U A  CGU     A U
Stem-loop sequence	GCUAUGUGUACAAACCUAAGAGAUCCACAUUGAAACUCUAUGAUUUCAUGCGUAGUUCUCUUAGAUUUCUACACAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163709.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   ||||||||||||||||*||||||| targets:9   ACACUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1373 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235378.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   ||||||||||||||||*||||||| targets:9   ACACUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1373 from Patent EP2985353	NA	coding protein	psRNATarget
HI403248.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   ||||||||||||||||*||||||| targets:9   ACACUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1373 from Patent EP2074227	NA	coding protein	psRNATarget
HI403245.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1370 from Patent EP2074227	NA	coding protein	psRNATarget
HI403238.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1363 from Patent EP2074227	NA	coding protein	psRNATarget
JB163706.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1370 from Patent EP2559767	NA	coding protein	psRNATarget
JB163671.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1335 from Patent EP2559767	NA	coding protein	psRNATarget
JB163654.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1318 from Patent EP2559767	NA	coding protein	psRNATarget
JB163655.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1319 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235337.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1332 from Patent EP2985353	NA	coding protein	psRNATarget
HI403207.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1332 from Patent EP2074227	NA	coding protein	psRNATarget
JB163668.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1332 from Patent EP2559767	NA	coding protein	psRNATarget
HI403249.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1374 from Patent EP2074227	NA	coding protein	psRNATarget
HI403236.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1361 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235375.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1370 from Patent EP2985353	NA	coding protein	psRNATarget
HI403210.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1335 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235366.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1361 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235368.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1363 from Patent EP2985353	NA	coding protein	psRNATarget
HI403193.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1318 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235340.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1335 from Patent EP2985353	NA	coding protein	psRNATarget
HI403194.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1319 from Patent EP2074227	NA	coding protein	psRNATarget
JB163710.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1374 from Patent EP2559767	NA	coding protein	psRNATarget
JB163697.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1361 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235324.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1319 from Patent EP2985353	NA	coding protein	psRNATarget
JB163699.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1363 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235379.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1374 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235323.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||=||||||||||||*||||||| targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1318 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =|||||||||||||||*||||||| targets:80   GCACUAUGUGUAGAAACCUAAGAG   103 Target Full Sequence	1.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =|||||||||||||||*||||||| targets:80   GCACUAUGUGUAGAAACCUAAGAG   103 Target Full Sequence	1.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =|||||||||||||||*||||||| targets:80   GCACUAUGUGUAGAAACCUAAGAG   103 Target Full Sequence	1.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||||||||*||||||| targets:86   AUACUAUGUGUAGAAACCUAAGAG   109 Target Full Sequence	1.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||||||||*||||||| targets:86   AUACUAUGUGUAGAAACCUAAGAG   109 Target Full Sequence	1.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||||||||*||||||| targets:86   AUACUAUGUGUAGAAACCUAAGAG   109 Target Full Sequence	1.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403253.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||*||||||||||||*||||||| targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1378 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235383.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||*||||||||||||*||||||| targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1378 from Patent EP2985353	NA	coding protein	psRNATarget
JB163714.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |||*||||||||||||*||||||| targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32 Target Full Sequence	1.5	Sequence 1378 from Patent EP2559767	NA	coding protein	psRNATarget
JB163630.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||*|||||*||||||| targets:7   AUACUAUGUGCAGAAACCUAAGAG   30 Target Full Sequence	2.5	Sequence 1294 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235299.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||*|||||*||||||| targets:7   AUACUAUGUGCAGAAACCUAAGAG   30 Target Full Sequence	2.5	Sequence 1294 from Patent EP2985353	NA	coding protein	psRNATarget
HI403169.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   |=||||||||*|||||*||||||| targets:7   AUACUAUGUGCAGAAACCUAAGAG   30 Target Full Sequence	2.5	Sequence 1294 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235364.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =||||||||*||||||*||||||| targets:12   GCACUAUGUUUAGAAACCUAAGAG   35 Target Full Sequence	2.5	Sequence 1359 from Patent EP2985353	NA	coding protein	psRNATarget
JB163695.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =||||||||*||||||*||||||| targets:12   GCACUAUGUUUAGAAACCUAAGAG   35 Target Full Sequence	2.5	Sequence 1359 from Patent EP2559767	NA	coding protein	psRNATarget
HI403234.1	ncRNA:24   UGUGAUACACAUCUUUAGAUUCUC   1   =||||||||*||||||*||||||| targets:12   GCACUAUGUUUAGAAACCUAAGAG   35 Target Full Sequence	2.5	Sequence 1359 from Patent EP2074227	NA	coding protein	psRNATarget