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BaseInfo

ncRNA ID	novel_zma_miR2092
Species	Zea mays
Class	miRNA
Genome position	Chr4:150431128-150431207 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	25
Mature sequence(if miRNA)	56 - AUAUAUAUAUAUAUAUAUGCGCGCG - 80
Stem-loop(if miRNA)	--U AC                                 A    G  UAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU U    |  |||||||||||||||||||||||||||||||||    C  GUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA A GCG GC                                 U
Stem-loop sequence	UGACUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUGCGCGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ068879.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||||||||||||||||||||||||* targets:5   CGCGCGCAUAUAUAUAUAUAUAUAG   29 Target Full Sequence	1.0	TSA: Zea mays contig04514, mRNA sequence	NA	coding protein	psRNATarget
EU970429.1	ncRNA:25   GCGC-GCGUAUAUAUAUAUAUAUAUA   1   ||||-||||||||||||||||||||| targets:38   CGCGUCGCAUAUAUAUAUAUAUAUAU   63 Target Full Sequence	0.0	Zea mays clone 345376 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151240.1	ncRNA:25   GCGC-GCGUAUAUAUAUAUAUAUAUA   1   ||||-||||||||||||||||||||| targets:38   CGCGUCGCAUAUAUAUAUAUAUAUAU   63 Target Full Sequence	0.0	Zea mays WW domain containing protein expressed (LOC100277752), mRNA	NA	coding protein	psRNATarget
BT088113.1	ncRNA:25   GCGCGCGU--AUAUAUAUAUAUAUAUA   1   ||||||||--||||||||||||||||| targets:1211   CGCGCGCACAUAUAUAUAUAUAUAUAU   1237 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0024G16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538892.1	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   ||||=-|||||||||||||||||||| targets:2834   CGCGUAGCAUAUAUAUAUAUAUAUAU   2859 Target Full Sequence	0.0	PREDICTED: Zea mays TPX2 (targeting protein for Xklp2) protein family (LOC100278833), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538893.1	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   ||||=-|||||||||||||||||||| targets:2792   CGCGUAGCAUAUAUAUAUAUAUAUAU   2817 Target Full Sequence	0.0	PREDICTED: Zea mays TPX2 (targeting protein for Xklp2) protein family (LOC100278833), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT064400.1	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   ||||=-|||||||||||||||||||| targets:2836   CGCGUAGCAUAUAUAUAUAUAUAUAU   2861 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0165O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151979.2	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   ||||=-|||||||||||||||||||| targets:2836   CGCGUAGCAUAUAUAUAUAUAUAUAU   2861 Target Full Sequence	0.0	Zea mays TPX2 (targeting protein for Xklp2) protein family (LOC100278833), mRNA	NA	coding protein	psRNATarget
BT085803.1	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   ||||=-|||||||||||||||||||| targets:2707   CGCGUAGCAUAUAUAUAUAUAUAUAU   2732 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0066E06 mRNA, complete cds	NA	coding protein	psRNATarget
EU968237.1	ncRNA:25   GCGCG-CGUAUAUAUAUAUAUAUAUA   1   |||||-|=|||||||||||||||||| targets:1652   CGCGCUGUAUAUAUAUAUAUAUAUAU   1677 Target Full Sequence	1.0	Zea mays clone 317222 spotted leaf protein 11 mRNA, complete cds	NA	coding protein	psRNATarget
BT068025.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=|=|=|||||||||||||||||| targets:1302   UGUGUGUAUAUAUAUAUAUAUAUAU   1326 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0020H04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176319.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=|=|=|||||||||||||||||| targets:1302   UGUGUGUAUAUAUAUAUAUAUAUAU   1326 Target Full Sequence	1.0	Zea mays farnesylated protein 3 (LOC100383680), mRNA	NA	coding protein	psRNATarget
DQ246147.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|||=|==||||||||||||||||| targets:366   UGCGUGUGUAUAUAUAUAUAUAUAU   390 Target Full Sequence	2.0	Zea mays clone 4139 mRNA sequence	NA	coding protein	psRNATarget
NM_001155985.1	ncRNA:25   GCGC--GCGUAUAUAUAUAUAUAUAUA   1   ||=|--=|||||||||||||||||||| targets:1550   CGUGGCUGCAUAUAUAUAUAUAUAUAU   1576 Target Full Sequence	0.0	Zea mays zinc finger protein CONSTANS-LIKE 16 (LOC100283083), mRNA	NA	coding protein	psRNATarget
EU963396.1	ncRNA:25   GCGC--GCGUAUAUAUAUAUAUAUAUA   1   ||=|--=|||||||||||||||||||| targets:1550   CGUGGCUGCAUAUAUAUAUAUAUAUAU   1576 Target Full Sequence	0.0	Zea mays clone 261863 zinc finger protein CONSTANS-LIKE 16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653520.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=|=|==||||||||||||||||| targets:1319   UGUGUGUGUAUAUAUAUAUAUAUAU   1343 Target Full Sequence	2.0	PREDICTED: Zea mays farnesylated protein 3 (LOC100383680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653519.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=|=|==||||||||||||||||| targets:1304   UGUGUGUGUAUAUAUAUAUAUAUAU   1328 Target Full Sequence	2.0	PREDICTED: Zea mays farnesylated protein 3 (LOC100383680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008653521.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=|=|==||||||||||||||||| targets:1304   UGUGUGUGUAUAUAUAUAUAUAUAU   1328 Target Full Sequence	2.0	PREDICTED: Zea mays farnesylated protein 3 (LOC100383680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT064196.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||||=*=|||||||||||||||||| targets:431   CGCGUCUAUAUAUAUAUAUAUAUAU   455 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0147I17 mRNA, complete cds	NA	coding protein	psRNATarget
BT064196.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:451   UAUAUAUAUAUAUAUAUAUAUAUAU   475 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0147I17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547518.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |||-||==||||||||||||||||| targets:3678   CGC-CGUGUAUAUAUAUAUAUAUAU   3701 Target Full Sequence	2.0	PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547519.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |||-||==||||||||||||||||| targets:3678   CGC-CGUGUAUAUAUAUAUAUAUAU   3701 Target Full Sequence	2.0	PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547520.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |||-||==||||||||||||||||| targets:3678   CGC-CGUGUAUAUAUAUAUAUAUAU   3701 Target Full Sequence	2.0	PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008677402.2	ncRNA:25   GCGCG--CGUAUAUAUAUAUAUAUAUA   1   **|||--|||||||||||||||||||| targets:1497   ACCGCUAGCAUAUAUAUAUAUAUAUAU   1523 Target Full Sequence	0.0	PREDICTED: Zea mays WD repeat-containing protein 25-like (LOC103651697), mRNA	NA	coding protein	psRNATarget
EU948267.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *|*|=|||||||||||||||||||| targets:50   AGAGUGCAUAUAUAUAUAUAUAUAU   74 Target Full Sequence	0.0	Zea mays clone 372080 mRNA sequence	NA	coding protein	psRNATarget
BT066273.1	ncRNA:25   GCGCG--CGUAUAUAUAUAUAUAUAUA   1   **|||--|||||||||||||||||||| targets:1389   ACCGCUAGCAUAUAUAUAUAUAUAUAU   1415 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0158H23 mRNA, complete cds	NA	coding protein	psRNATarget
EU957584.1	ncRNA:25   GCGCG---C---GUAUAUAUAUAUAUAUAUA   1   ||=||---|---||||||||||||||||||| targets:1639   CGUGCACAGAUACAUAUAUAUAUAUAUAUAU   1669 Target Full Sequence	3.0	Zea mays clone 1597863 carboxyl-terminal proteinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154622.1	ncRNA:25   GCGCG---C---GUAUAUAUAUAUAUAUAUA   1   ||=||---|---||||||||||||||||||| targets:1639   CGUGCACAGAUACAUAUAUAUAUAUAUAUAU   1669 Target Full Sequence	3.0	Zea mays uncharacterized LOC100281702 (cl16441_1), mRNA	NA	coding protein	psRNATarget
XM_008663474.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|=*=|=|||||||||||||||||| targets:1894   UGUAUGUAUAUAUAUAUAUAUAUAU   1918 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 28 (LOC103640532), mRNA	NA	coding protein	psRNATarget
XM_008650665.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*||-|||||||||||||||||||| targets:1524   CACG-GCAUAUAUAUAUAUAUAUAU   1547 Target Full Sequence	0.0	PREDICTED: Zea mays oligopeptide transporter-like protein (LOC103629595), mRNA	NA	coding protein	psRNATarget
BT062112.1	ncRNA:25   GCG-CG-CG-UAUAUAUAUAUAUAUAUA   1   |||-||-||-|||||||||||||||||| targets:876   CGCUGCUGCUAUAUAUAUAUAUAUAUAU   903 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0215J22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174533.1	ncRNA:25   GCG-CG-CG-UAUAUAUAUAUAUAUAUA   1   |||-||-||-|||||||||||||||||| targets:876   CGCUGCUGCUAUAUAUAUAUAUAUAUAU   903 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381726 (LOC100381726), mRNA	NA	coding protein	psRNATarget
NM_001175609.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||=|=-=|||||||||||||||||| targets:1169   CGUGU-UAUAUAUAUAUAUAUAUAU   1192 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382921 (LOC100382921), mRNA	NA	coding protein	psRNATarget
BT065721.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||=|=-=|||||||||||||||||| targets:1169   CGUGU-UAUAUAUAUAUAUAUAUAU   1192 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0045O11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657584.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=|=|=||||||||||||||=||| targets:2892   UAUGUGUAUAUAUAUAUAUAUGUAU   2916 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635016 (LOC103635016), mRNA	NA	coding protein	psRNATarget
BT085754.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **||*|=|||||||||||||||||| targets:1366   AACGAGUAUAUAUAUAUAUAUAUAU   1390 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0057E22 mRNA, complete cds	NA	coding protein	psRNATarget
EU948563.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **|*=|||||||||||||||||||| targets:1103   AACUUGCAUAUAUAUAUAUAUAUAU   1127 Target Full Sequence	0.0	Zea mays clone 380068 mRNA sequence	NA	coding protein	psRNATarget
EU952178.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **=*=|||||||||||||||||||| targets:577   AAUCUGCAUAUAUAUAUAUAUAUAU   601 Target Full Sequence	0.0	Zea mays clone 1216761 mRNA sequence	NA	coding protein	psRNATarget
XM_020540970.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *|=|=*=|||||||||||||||||| targets:1486   AGUGUUUAUAUAUAUAUAUAUAUAU   1510 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632352 (LOC103632352), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020540969.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *|=|=*=|||||||||||||||||| targets:1485   AGUGUUUAUAUAUAUAUAUAUAUAU   1509 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940765 (LOC109940765), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008647135.2	ncRNA:25   GCGCG-----------CGUAUAUAUAUAUAUAUAUA   1   =|=||-----------|||||||||||||||||||| targets:1045   UGUGCAAGGAGAAGGAGCAUAUAUAUAUAUAUAUAU   1080 Target Full Sequence	0.0	PREDICTED: Zea mays basic leucine zipper 8 (LOC103626765), mRNA	NA	coding protein	psRNATarget
BT066134.1	ncRNA:25   GCG-CGCGUAUAUAUAUAUAUAUAUA   1   *||-||-||||||||||||||||||| targets:2487   GGCAGC-CAUAUAUAUAUAUAUAUAU   2511 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0009K01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551201.1	ncRNA:25   GCGCG----CGU---AUAUAUAUAUAUAUAUA   1   *||||----|||---||||||||||||||||| targets:72   AGCGCUUCCGCAAGAUAUAUAUAUAUAUAUAU   103 Target Full Sequence	3.0	PREDICTED: Zea mays ternary complex factor MIP1 (LOC100281512), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679913.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|||=|||||=||||||||||| targets:262   CCCACGCGUAUAUGUAUAUAUAUAU   286 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 94B3 (LOC103652921), mRNA	NA	coding protein	psRNATarget
NM_001175940.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=|*|=|||||||||||||||||| targets:1679   CUUGAGUAUAUAUAUAUAUAUAUAU   1703 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383280 (LOC100383280), mRNA	NA	coding protein	psRNATarget
NM_001175940.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:1699   UAUAUAUAUAUAUAUAUAUAUAUAU   1723 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383280 (LOC100383280), mRNA	NA	coding protein	psRNATarget
NM_001175940.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:1719   UAUAUAUAUAUAUAUAUAUAUAUAU   1743 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383280 (LOC100383280), mRNA	NA	coding protein	psRNATarget
BT066774.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=|*|=|||||||||||||||||| targets:1679   CUUGAGUAUAUAUAUAUAUAUAUAU   1703 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0071F12 mRNA, complete cds	NA	coding protein	psRNATarget
BT066774.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:1699   UAUAUAUAUAUAUAUAUAUAUAUAU   1723 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0071F12 mRNA, complete cds	NA	coding protein	psRNATarget
BT066774.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:1719   UAUAUAUAUAUAUAUAUAUAUAUAU   1743 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0071F12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176460.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=|*|=|||||||||||||||||| targets:1695   CCUGAGUAUAUAUAUAUAUAUAUAU   1719 Target Full Sequence	1.0	Zea mays putative bZIP transcription factor superfamily protein (LOC100383828), mRNA	NA	coding protein	psRNATarget
BT068393.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=|*|=|||||||||||||||||| targets:1695   CCUGAGUAUAUAUAUAUAUAUAUAU   1719 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155D12 mRNA, complete cds	NA	coding protein	psRNATarget
BT067441.1	ncRNA:25   GCGCG----CGU--AUAUAUAUAUAUAUAUA   1   ||=|=----|||--||||||||||||||||| targets:1574   CGUGUACUUGCAAAUAUAUAUAUAUAUAUAU   1604 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT067441.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:1600   UAUAUAUAUAUAUAUAUAUAUAUAU   1624 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0047E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT056083.1	ncRNA:25   GCG-CGCGUAUAUAUAUAUAUAUAUA   1   *||-||-||||||||||||||||||| targets:1046   GGCAGC-CAUAUAUAUAUAUAUAUAU   1070 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0003E14 mRNA, complete cds	NA	coding protein	psRNATarget
EU942669.1	ncRNA:25   GCGC--GCGUAUAUAUAUAUAUAUA-UA   1   =|=|--=||||||||||||||||||-|| targets:1060   UGUGGUUGCAUAUAUAUAUAUAUAUUAU   1087 Target Full Sequence	3.0	Zea mays clone 1529191 mRNA sequence	NA	coding protein	psRNATarget
EU970028.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=|=||||||||||||||||||*| targets:1056   CCUGUGCAUAUAUAUAUAUAUAUCU   1080 Target Full Sequence	1.5	Zea mays clone 338742 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY106872.1	ncRNA:25   GCG-CGCGUAUAUAUAUAUAUAUAUA   1   *||-||-||||||||||||||||||| targets:737   GGCAGC-CAUAUAUAUAUAUAUAUAU   761 Target Full Sequence	0.0	Zea mays PCO149273 mRNA sequence	NA	coding protein	psRNATarget
BT085920.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =||*=|*|||||||||||||||||| targets:259   UGCAUGGAUAUAUAUAUAUAUAUAU   283 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0085P21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139182.1	ncRNA:25   GCG-CGCGUAUAUAUAUAUAUAUAUA   1   *||-||-||||||||||||||||||| targets:708   GGCAGC-CAUAUAUAUAUAUAUAUAU   732 Target Full Sequence	0.0	Zea mays uncharacterized LOC100194129 (umc1709), mRNA	NA	coding protein	psRNATarget
BT036581.1	ncRNA:25   GCG-CGCGUAUAUAUAUAUAUAUAUA   1   *||-||-||||||||||||||||||| targets:708   GGCAGC-CAUAUAUAUAUAUAUAUAU   732 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0124H16 mRNA, complete cds	NA	coding protein	psRNATarget
EU971634.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ***|*|||||||||||||||||||| targets:600   GAAGGGCAUAUAUAUAUAUAUAUAU   624 Target Full Sequence	0.0	Zea mays clone 368416 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549314.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ***|*|||||||||||||||||||| targets:594   GAAGGGCAUAUAUAUAUAUAUAUAU   618 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100278009 (LOC100278009), mRNA	NA	coding protein	psRNATarget
XM_020549314.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:614   UAUAUAUAUAUAUAUAUAUAUAUAU   638 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100278009 (LOC100278009), mRNA	NA	coding protein	psRNATarget
EZ110846.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||*|-|=|||||||||||||||||| targets:168   CGAG-GUAUAUAUAUAUAUAUAUAU   191 Target Full Sequence	1.0	TSA: Zea mays contig46507, mRNA sequence	NA	coding protein	psRNATarget
XM_008650553.2	ncRNA:25   GCG----CG---CGUAUAUAUAUAUAUAUAUA   1   |||----|=---|=|||||||||||||||||| targets:1582   CGCAUAUGUAUAGUAUAUAUAUAUAUAUAUAU   1613 Target Full Sequence	1.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC103629429), mRNA	NA	coding protein	psRNATarget
NM_001150627.2	ncRNA:25   GCG----CGCGUAUAUAUAUAUAUAUAUA   1   =||----|=*||||||||||||||||||| targets:1404   UGCAAGAGUACAUAUAUAUAUAUAUAUAU   1432 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276935 (LOC100276935), mRNA	NA	coding protein	psRNATarget
BT061135.1	ncRNA:25   GCG----CGCGUAUAUAUAUAUAUAUAUA   1   =||----|=*||||||||||||||||||| targets:1400   UGCAAGAGUACAUAUAUAUAUAUAUAUAU   1428 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0114C18 mRNA, complete cds	NA	coding protein	psRNATarget
EU949260.1	ncRNA:25   GCG---CGCGUAUAUAUAUAUAUAUAUA   1   |||---||*|||=|||=||||||||||| targets:47   CGCUAUGCACAUGUAUGUAUAUAUAUAU   74 Target Full Sequence	2.5	Zea mays clone 400411 mRNA sequence	NA	coding protein	psRNATarget
BT054987.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *****|||||||||||||||||||| targets:1145   AAGAAGCAUAUAUAUAUAUAUAUAU   1169 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0168N14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152787.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *****|||||||||||||||||||| targets:1145   AAGAAGCAUAUAUAUAUAUAUAUAU   1169 Target Full Sequence	0.0	Zea mays OSJNBb0026E15.9-like protein (LOC100279833), mRNA	NA	coding protein	psRNATarget
BT063601.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *****|||||||||||||||||||| targets:1135   AAGAAGCAUAUAUAUAUAUAUAUAU   1159 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0084I06 mRNA, complete cds	NA	coding protein	psRNATarget
EU974220.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **|**|||||||||||||||||||| targets:543   AUCAAGCAUAUAUAUAUAUAUAUAU   567 Target Full Sequence	0.0	Zea mays clone 443205 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151781.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **|**|||||||||||||||||||| targets:543   AUCAAGCAUAUAUAUAUAUAUAUAU   567 Target Full Sequence	0.0	Zea mays uncharacterized LOC100278541 (LOC100278541), mRNA	NA	coding protein	psRNATarget
XM_020543485.1	ncRNA:25   GC--GCGC---GUAUAUAUAUAUAUAUAUA   1   ||--|*||---||||||||||||||||||| targets:2481   CGUACACGGAUCAUAUAUAUAUAUAUAUAU   2510 Target Full Sequence	3.0	PREDICTED: Zea mays L-Aspartase-like family protein (IDP310), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550040.1	ncRNA:25   GCGCG-------CGUAUAUAUAUAUA-UAUAUA   1   =|=||-------||||||||||||||-|||||| targets:2338   UGUGCUAGUCAGGCAUAUAUAUAUAUUAUAUAU   2370 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC107604628 (LOC107604628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550042.1	ncRNA:25   GCGCG-------CGUAUAUAUAUAUA-UAUAUA   1   =|=||-------||||||||||||||-|||||| targets:2311   UGUGCUAGUCAGGCAUAUAUAUAUAUUAUAUAU   2343 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC107604628 (LOC107604628), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661038.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *||*|*=|||||||||||||||||| targets:521   AGCACCUAUAUAUAUAUAUAUAUAU   545 Target Full Sequence	1.0	PREDICTED: Zea mays carotenoid 9,10(9',10')-cleavage dioxygenase 1 (LOC103638029), mRNA	NA	coding protein	psRNATarget
XM_008661038.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:541   UAUAUAUAUAUAUAUAUAUAUAUAU   565 Target Full Sequence	1.0	PREDICTED: Zea mays carotenoid 9,10(9',10')-cleavage dioxygenase 1 (LOC103638029), mRNA	NA	coding protein	psRNATarget
EU949886.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=||-||||||||||||||||||| targets:166   UCUGC-CAUAUAUAUAUAUAUAUAU   189 Target Full Sequence	0.0	Zea mays clone 451070 mRNA sequence	NA	coding protein	psRNATarget
EU949886.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:185   UAUAUAUAUAUAUAUAUAUAUAUAU   209 Target Full Sequence	1.0	Zea mays clone 451070 mRNA sequence	NA	coding protein	psRNATarget
XM_020550041.1	ncRNA:25   GCGCG-------CGUAUAUAUAUAUA-UAUAUA   1   =|=||-------||||||||||||||-|||||| targets:2207   UGUGCUAGUCAGGCAUAUAUAUAUAUUAUAUAU   2239 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC107604628 (LOC107604628), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654486.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*=*=|=|||||||||||||||||| targets:196   CAUAUGUAUAUAUAUAUAUAUAUAU   220 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632745 (LOC103632745), mRNA	NA	coding protein	psRNATarget
XM_008676645.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **=*|||||||=|=||||||||||| targets:1276   GAUACGCAUAUGUGUAUAUAUAUAU   1300 Target Full Sequence	2.5	PREDICTED: Zea mays protein G1-like7 (LOC103651051), mRNA	NA	coding protein	psRNATarget
BT083547.1	ncRNA:25   GCGCGCGU---AUAUAUAUAUAUAUAUA   1   *|=|*|||---||||||||||||||||| targets:125   AGUGAGCAAGCUAUAUAUAUAUAUAUAU   152 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0011A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177035.1	ncRNA:25   GCGCGCGU---AUAUAUAUAUAUAUAUA   1   *|=|*|||---||||||||||||||||| targets:125   AGUGAGCAAGCUAUAUAUAUAUAUAUAU   152 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100384512), mRNA	NA	coding protein	psRNATarget
EU946323.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   *|=|=-=|||||||||||||||||| targets:681   AGUGU-UAUAUAUAUAUAUAUAUAU   704 Target Full Sequence	1.0	Zea mays clone 304265 mRNA sequence	NA	coding protein	psRNATarget
AY107066.1	ncRNA:25   GCGCGCGU---AUAUAUAUAUAUAUAUA   1   *|=|*|||---||||||||||||||||| targets:128   AGUGAGCAAGCUAUAUAUAUAUAUAUAU   155 Target Full Sequence	3.0	Zea mays PCO061267 mRNA sequence	NA	coding protein	psRNATarget
KC425006.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =||-|*=|||||||||||||||||| targets:641   UGC-CUUAUAUAUAUAUAUAUAUAU   664 Target Full Sequence	1.0	Zea mays arginine/serine-rich splicing factor RS2Z35 transcript III (RS2Z35) mRNA, RS2Z35III allele, complete cds, alternatively spliced	NA	coding protein	psRNATarget
EU953241.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =|*|=-||||||||||||||||||| targets:383   UGAGU-CAUAUAUAUAUAUAUAUAU   406 Target Full Sequence	0.0	Zea mays clone 1392998 mRNA sequence	NA	coding protein	psRNATarget
EU962658.1	ncRNA:25   GCGCG---CGUAUAUAUAUAUAUAUAUA   1   |||*|---|||||||||||||||||*|| targets:527   CGCUCACCGCAUAUAUAUAUAUAUAGAU   554 Target Full Sequence	1.5	Zea mays clone 244504 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656417.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|*||||||||||||||||||| targets:1609   CACACACAUAUAUAUAUAUAUAUAU   1633 Target Full Sequence	0.0	PREDICTED: Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147785.1	ncRNA:25   GCGCGCG-UAUAUAUAUAUAUAUAUA   1   *||-=||-|||||||||||||||||| targets:1575   AGC-UGCUAUAUAUAUAUAUAUAUAU   1599 Target Full Sequence	2.0	Zea mays putative cytochrome P450 superfamily protein (LOC100273344), mRNA	NA	coding protein	psRNATarget
BT040868.1	ncRNA:25   GCGCGCG-UAUAUAUAUAUAUAUAUA   1   *||-=||-|||||||||||||||||| targets:1575   AGC-UGCUAUAUAUAUAUAUAUAUAU   1599 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0143J12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669404.2	ncRNA:25   GCGCGCG-UAUAUAUAUAUAUAUAUA   1   *||-=||-|||||||||||||||||| targets:1629   AGC-UGCUAUAUAUAUAUAUAUAUAU   1653 Target Full Sequence	2.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100273344), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT037003.1	ncRNA:25   GCGCG---CGUAUAUAUAUAUAUAUAUA   1   |||*|---|||||||||||||||||*|| targets:170   CGCUCACCGCAUAUAUAUAUAUAUAGAU   197 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0151A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT066489.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **||||=*||||||||||||||||* targets:1413   AUCGCGUCUAUAUAUAUAUAUAUAG   1437 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0013C21 mRNA, complete cds	NA	coding protein	psRNATarget
EU962914.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ***||*=|||||||||||||||||| targets:1170   GAAGCUUAUAUAUAUAUAUAUAUAU   1194 Target Full Sequence	1.0	Zea mays clone 246509 mRNA sequence	NA	coding protein	psRNATarget
NM_001148685.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|*||||||||||||||||||| targets:1132   CACACACAUAUAUAUAUAUAUAUAU   1156 Target Full Sequence	0.0	Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), mRNA	NA	coding protein	psRNATarget
BT042772.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|*||||||||||||||||||| targets:1132   CACACACAUAUAUAUAUAUAUAUAU   1156 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0038P19 mRNA, complete cds	NA	coding protein	psRNATarget
BT043286.1	ncRNA:25   GCGCG---CGUAUAUAUAUAUAUAUAUA   1   |||*|---|||||||||||||||||*|| targets:168   CGCUCACCGCAUAUAUAUAUAUAUAGAU   195 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0145J13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001308291.1	ncRNA:25   GCGCG---CGUAUAUAUAUAUAUAUAUA   1   |||*|---|||||||||||||||||*|| targets:73   CGCUCACCGCAUAUAUAUAUAUAUAGAU   100 Target Full Sequence	1.5	Zea mays pyrrolidone-carboxylate peptidase (LOC100276484), mRNA	NA	coding protein	psRNATarget
BT063359.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*||=*|||=|||=||||||||||| targets:643   CUCGUUCAUGUAUGUAUAUAUAUAU   667 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0056E05 mRNA, complete cds	NA	coding protein	psRNATarget
AY155581.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ***||*=|||||||||||||||||| targets:569   GAAGCUUAUAUAUAUAUAUAUAUAU   593 Target Full Sequence	1.0	Zea mays 1-aminocyclopropane-1-carboxylic acid oxidase (acco1) mRNA, partial cds	NA	coding protein	psRNATarget
DQ246040.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|*||||||||||||||||||| targets:496   CACACACAUAUAUAUAUAUAUAUAU   520 Target Full Sequence	0.0	Zea mays clone 8663 mRNA sequence	NA	coding protein	psRNATarget
EU963908.1	ncRNA:25   GCGC--------GCGU--AUAUAUAUAUAUAUAUA   1   *|||--------||||--||||||||||||||||| targets:14   AGCGGGCAACAUCGCAGAUAUAUAUAUAUAUAUAU   48 Target Full Sequence	2.5	Zea mays clone 273998 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975202.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ***|=*||||||||||||||||||| targets:486   AUAGUCCAUAUAUAUAUAUAUAUAU   510 Target Full Sequence	0.0	Zea mays clone 484282 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
EU969535.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   ||=-=|*|||||||||||||||||| targets:452   CGU-UGGAUAUAUAUAUAUAUAUAU   475 Target Full Sequence	1.0	Zea mays clone 331606 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU969535.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:471   UAUAUAUAUAUAUAUAUAUAUAUAU   495 Target Full Sequence	1.0	Zea mays clone 331606 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU969535.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=*=*=|||||||||||||||||| targets:491   UAUAUAUAUAUAUAUAUAUAUAUAU   515 Target Full Sequence	1.0	Zea mays clone 331606 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538936.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=||-=|||||||||||||||||| targets:1618   UAUGC-UAUAUAUAUAUAUAUAUAU   1641 Target Full Sequence	1.0	PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654484.2	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   =*=|=*=|||||||||||||||||| targets:3635   UAUGUCUAUAUAUAUAUAUAUAUAU   3659 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103632744 (LOC103632744), mRNA	NA	coding protein	psRNATarget
XM_020550404.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **||=-=|||||||||||||||||| targets:2617   AUCGU-UAUAUAUAUAUAUAUAUAU   2640 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109944869 (LOC109944869), mRNA	NA	coding protein	psRNATarget
EU941959.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   |*|*|*||||||||||||||||||| targets:7   CACACACAUAUAUAUAUAUAUAUAU   31 Target Full Sequence	0.0	Zea mays clone 1472937 mRNA sequence	NA	coding protein	psRNATarget
EZ063255.1	ncRNA:25   GCGC--GCGUAUAUAUAUAUAUAUAUA   1   **||--|*||||||||||||||||||| targets:171   GUCGAACUCAUAUAUAUAUAUAUAUAU   197 Target Full Sequence	0.0	TSA: Zea mays contig64377, mRNA sequence	NA	coding protein	psRNATarget
BT039008.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **=**|=|||||||||||||||||| targets:249   AUUAGGUAUAUAUAUAUAUAUAUAU   273 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348N14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147056.1	ncRNA:25   GCGCGCGUAUAUAUAUAUAUAUAUA   1   **=**|=|||||||||||||||||| targets:249   AUUAGGUAUAUAUAUAUAUAUAUAU   273 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100272593), mRNA	NA	coding protein	psRNATarget