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BaseInfo

ncRNA ID	novel_zma_miR2091
Species	Zea mays
Class	miRNA
Genome position	Chr2:198347625-198347692 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - CGUUUUAUUUUAGUUGUCGUUGGA - 24
Stem-loop(if miRNA)	--      A                     A  A   CGUUUU UUUUAGUUGUCGUUGGAUAGU CA A   |||||| ||||||||||||||||||||| ||   GCAAAG AAAAUCAACGGCAACUUAUCA GU A AA      A                     A  U
Stem-loop sequence	CGUUUUAUUUUAGUUGUCGUUGGAUAGUACAAAAUUGAACUAUUCAACGGCAACUAAAAAGAAACGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001149050.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |||||||||||||||||||||||| targets:512   UCCAACGACAACUAAAAUAAAACG   535 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100274760), mRNA	NA	coding protein	psRNATarget
EU952581.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |||||||||||||||||||||||| targets:512   UCCAACGACAACUAAAAUAAAACG   535 Target Full Sequence	0.0	Zea mays clone 1283791 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238505.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |||||||||||||||||||||||| targets:46   UCCAACGACAACUAAAAUAAAACG   69 Target Full Sequence	0.0	Sequence 4500 from Patent EP2985353	NA	coding protein	psRNATarget
JB166836.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |||||||||||||||||||||||| targets:46   UCCAACGACAACUAAAAUAAAACG   69 Target Full Sequence	0.0	Sequence 4500 from Patent EP2559767	NA	coding protein	psRNATarget
HI406375.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |||||||||||||||||||||||| targets:46   UCCAACGACAACUAAAAUAAAACG   69 Target Full Sequence	0.0	Sequence 4500 from Patent EP2074227	NA	coding protein	psRNATarget
HI410051.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||||=||||||=|||||||||||| targets:52   UCCAGCGACAAUUAAAAUAAAACG   75 Target Full Sequence	1.5	Sequence 8176 from Patent EP2074227	NA	coding protein	psRNATarget
JB170512.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||||=||||||=|||||||||||| targets:52   UCCAGCGACAAUUAAAAUAAAACG   75 Target Full Sequence	1.5	Sequence 8176 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242181.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||||=||||||=|||||||||||| targets:52   UCCAGCGACAAUUAAAAUAAAACG   75 Target Full Sequence	1.5	Sequence 8176 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:2193   UUCAGCGACAACUAAAAUGAAACG   2216 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:2162   UUCAGCGACAACUAAAAUGAAACG   2185 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:2080   UUCAGCGACAACUAAAAUGAAACG   2103 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:2049   UUCAGCGACAACUAAAAUGAAACG   2072 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1460   UUCAGCGACAACUAAAAUGAAACG   1483 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1354   UUCAGCGACAACUAAAAUGAAACG   1377 Target Full Sequence	1.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1352   UUCAGCGACAACUAAAAUGAAACG   1375 Target Full Sequence	1.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1300   UUCAGCGACAACUAAAAUGAAACG   1323 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1286   UUCAGCGACAACUAAAAUGAAACG   1309 Target Full Sequence	1.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1271   UUCAGCGACAACUAAAAUGAAACG   1294 Target Full Sequence	1.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU953599.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1276   UUCAGCGACAACUAAAAUGAAACG   1299 Target Full Sequence	1.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   |=||=|||||||||||||=||||| targets:1188   UUCAGCGACAACUAAAAUGAAACG   1211 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||=|=|||||||||||||=||||| targets:62   UCUAGCGACAACUAAAAUGAAACG   85 Target Full Sequence	1.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||=|=|||||||||||||=||||| targets:62   UCUAGCGACAACUAAAAUGAAACG   85 Target Full Sequence	1.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||=|=|||||||||||||=||||| targets:62   UCUAGCGACAACUAAAAUGAAACG   85 Target Full Sequence	1.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001112301.2	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||||=||||||||||||*|||||| targets:1369   UCCAGCGACAACUAAAACAAAACG   1392 Target Full Sequence	1.5	Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA	NA	coding protein	psRNATarget
EU955357.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUUGC   1   ||||=||||||||||||*|||||| targets:1307   UCCAGCGACAACUAAAACAAAACG   1330 Target Full Sequence	1.5	Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
EZ097463.1	ncRNA:24   AGGUUGCUGUUGAUUUUAUUUU-GC   1   |=||=|||||||||||||||||-|| targets:90   UUCAGCGACAACUAAAAUAAAAACG   114 Target Full Sequence	3.0	TSA: Zea mays contig33118, mRNA sequence	NA	coding protein	psRNATarget