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BaseInfo

ncRNA ID	novel_zma_miR2090
Species	Zea mays
Class	miRNA
Genome position	Chr2:198092063-198092196 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089715;SRR5451006
Length	24
Mature sequence(if miRNA)	1 - AAGGGUCUGUUUGGUUCGUGGCUA - 24
Stem-loop(if miRNA)	--A                -G         G     C          -------------        CG   A    AGGGUCUGUUUGGUUC  UGGCUAACU UGCCA ACUUUGCCUA             AGGUUAGU  UUC A    ||||||||||||||||  ||||||||| ||||| ||||||||||             ||||||||  ||| A    UCCCGGACAAACCAAG  ACCGAUUGA ACGGU UGAAACGGAU             UCCAAUCA  AAG U GAA                AG         -     A          UGAAAAGACUGAU        AG   U
Stem-loop sequence	AAGGGUCUGUUUGGUUCGUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAGAACUAACCUUAGUCAGAAAAGUUAGGCAAAGUAUGGCAAGUUAGCCAGAGAACCAAACAGGCCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   |||||||||||||||||||||||* targets:712   UAGCCACGAACCAAACAGACCCUA   735 Target Full Sequence	1.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   |||||||||||||||||||||||* targets:695   UAGCCACGAACCAAACAGACCCUA   718 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   |||||||||||||||||||||||* targets:730   UAGCCACGAACCAAACAGACCCUA   753 Target Full Sequence	1.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||=||||* targets:2492   UAGCCACGAACCAAACAGGCCCUA   2515 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||*||||| targets:799   UAGCCACGAACCAAACAGCCCCUU   822 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||*||||| targets:799   UAGCCACGAACCAAACAGCCCCUU   822 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||*||||| targets:799   UAGCCACGAACCAAACAGCCCCUU   822 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||*||||| targets:2764   UAGCCACGAACCAAACAGCCCCUU   2787 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||||||||||||||||||*||||* targets:141   UAGCCACGAACCAAACAGCCCCUA   164 Target Full Sequence	2.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   AUCGGU-GCUUGGUUUGUCUGGGAA   1   |||=||-|*|||||||||||||||| targets:1257   UAGUCAUCAAACCAAACAGACCCUU   1281 Target Full Sequence	3.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   |||*=|||||||||||||*||||| targets:488   UAGAUACGAACCAAACAGCCCCUU   511 Target Full Sequence	1.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||*||||*||||||||||=||||| targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||*||||*||||||||||=||||| targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   ||*|||||||||||||||*||||* targets:424   UAACCACGAACCAAACAGUCCCUC   447 Target Full Sequence	2.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
NM_001147982.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   **|==|*|||||||||||||=||| targets:1708   CCGUUAGGAACCAAACAGACUCUU   1731 Target Full Sequence	2.5	Zea mays F-actin-capping protein subunit alpha (LOC100273564), mRNA	NA	coding protein	psRNATarget
BT041399.2	ncRNA:24   AUCGGUGCUUGGUUUGUCUGGGAA   1   **|==|*|||||||||||||=||| targets:1708   CCGUUAGGAACCAAACAGACUCUU   1731 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0115H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550009.1	ncRNA:24   AUCGGUGCUU-GGUUUGUCUGGGAA   1   |||*=|*|||-|||||||||||||| targets:3751   UAGGUAGGAAACCAAACAGACCCUU   3775 Target Full Sequence	3.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675272.2	ncRNA:24   AUCGGUGCUU-GGUUUGUCUGGGAA   1   |||*=|*|||-|||||||||||||| targets:3870   UAGGUAGGAAACCAAACAGACCCUU   3894 Target Full Sequence	3.0	PREDICTED: Zea mays GTP binding (LOC101202714), transcript variant X1, mRNA	NA	coding protein	psRNATarget