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BaseInfo

ncRNA ID	osa-miR812t
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:17370227-17370448 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - ACGGAAAAUCAUGGCUGCACUUAA - 34
Stem-loop(if miRNA)	U      C          AAA      G     -UA CG            C              --------------UUU         --U  - AUUUUUACUGUUAUGAGAUG  AUGUUC AUUUUAAGUG   CCAUGA UUUUU   C  AACUUUGAUUGU UGUCUUAUUUGAAA                 UUUUAUAAU   AG U                    A  |||||| ||||||||||   |||||| |||||   |  |||||||||||| ||||||||||||||                 |||||||||   || |                    U  UACAAG UAAAAUUCAC   GGUACU AAAGG   G  UUGAAACUAGCA GCAGAAUAAACUUU                 UUUCGUAUU   UA G                    A -      A          GUC      A     CAC AU            A              UUUUAAACUUUUUUAAU         CAG  C UAUUUCAUAAUAAGUACGAA
Stem-loop sequence	UAUGUUCCAUUUUAAGUGAAACCAUGAGUUUUUUACCGAACUUUGAUUGUCUGUCUUAUUUGAAAUUUUUUUAUAAUUAGUAUUUUUACUGUUAUGAGAUGAUAAAGCAUGAAUAAUACUUUAUGCAUGACUUAUGCUUUUAAUUUUUUCAAAUUUUUUUCAAAUAAGACGAACGAUCAAAGUUUAGCACGGAAAAUCAUGGCUGCACUUAAAAUAGAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070816.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||=|||||||||||||||| targets:1527   UUAAGUGUAGCCAUGAUUUUCCGU   1550 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
HI404034.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||||||||=|||||||* targets:21   UUAAGUGCAGCCAUGGUUUUCCGC   44 Target Full Sequence	2.5	Sequence 2159 from Patent EP2074227	NA	coding protein	psRNATarget
JB164495.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||||||||=|||||||* targets:21   UUAAGUGCAGCCAUGGUUUUCCGC   44 Target Full Sequence	2.5	Sequence 2159 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236164.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||||||||=|||||||* targets:21   UUAAGUGCAGCCAUGGUUUUCCGC   44 Target Full Sequence	2.5	Sequence 2159 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||=||||||||*||||||| targets:2573   UUAAGUGUAGCCAUGAGUUUCCGU   2596 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||=||||||||*||||||| targets:2587   UUAAGUGUAGCCAUGAGUUUCCGU   2610 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
LQ236551.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||*||||||*||||||| targets:8   UUAAGUGCAACCAUGAGUUUCCGU   31 Target Full Sequence	2.5	Sequence 2546 from Patent EP2985353	NA	coding protein	psRNATarget
HI404421.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||*||||||*||||||| targets:8   UUAAGUGCAACCAUGAGUUUCCGU   31 Target Full Sequence	2.5	Sequence 2546 from Patent EP2074227	NA	coding protein	psRNATarget
JB164882.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||||||*||||||*||||||| targets:8   UUAAGUGCAACCAUGAGUUUCCGU   31 Target Full Sequence	2.5	Sequence 2546 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015779132.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   |||||*||||||||||*||||||| targets:2774   UUAAGCGCAGCCAUGAGUUUCCGU   2797 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4337209), mRNA	receptor-like protein 12(LOC4337209)	coding protein	psRNATarget
XM_015774449.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   *|||||||||||||||*||||||* targets:2567   AUAAGUGCAGCCAUGAAUUUCCGC   2590 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like (LOC4334004), mRNA	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like(LOC4334004)	coding protein	psRNATarget
AK288230.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   *|||||||||||||||*||||||* targets:5480   GUAAGUGCAGCCAUGAGUUUCCGC   5503 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget
HI403877.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   *||||||||*=||||||||||||* targets:13   CUAAGUGCAAUCAUGAUUUUCCGC   36 Target Full Sequence	3.0	Sequence 2002 from Patent EP2074227	NA	coding protein	psRNATarget
JB164338.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   *||||||||*=||||||||||||* targets:13   CUAAGUGCAAUCAUGAUUUUCCGC   36 Target Full Sequence	3.0	Sequence 2002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236007.1	ncRNA:24   AAUUCACGUCGGUACUAAAAGGCA   1   *||||||||*=||||||||||||* targets:13   CUAAGUGCAAUCAUGAUUUUCCGC   36 Target Full Sequence	3.0	Sequence 2002 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).