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BaseInfo

ncRNA ID novel_zma_miR2082
Species Zea mays
Class miRNA
Genome position Chr2:167611726-167611898 [+]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 150 - UUCAGAUUAGAAGUUUACACGGUU - 173
Stem-loop(if miRNA) --     C            -    CC                 -   A   -A    -----------------------U   GAUAAUUUUACACUU
  CCGUG AAACUUCUAAUC GGGC  ACAUGAUGUUGAUCCAA GGG CAU  GGGG                        GUG               A
  ||||| |||||||||||| ||||  ||||||||||||||||| ||| |||  ||||                        |||
  GGCAC UUUGAAGAUUAG CUUG  UGUACUACAACUAGGUU CCC GUA  CCCC                        CAC               A
UU     A            A    -U                 A   C   CG    CUCCCCUCCUCCUAAACUUUUUCA   UAACCGUCGCCCACC
Stem-loop sequence CCGUGCAAACUUCUAAUCGGGCCCACAUGAUGUUGAUCCAAGGGACAUAGGGGUGUGGAUAAUUUUACACUUAACCACCCGCUGCCAAUCACACUUUUUCAAAUCCUCCUCCCCUCCCCCGCAUGCCCCAUUGGAUCAACAUCAUGUUGUUCAGAUUAGAAGUUUACACGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU960978.1
ncRNA:24   UUGGCACAUUUGAAGAUUAGACUU   1
  ||=||||*||||||||||||||*|
targets:826   AAUCGUGCAAACUUCUAAUCUGUA   849

2.5 Zea mays clone 230113 mRNA sequence NA coding protein psRNATarget
XM_008676928.2
ncRNA:24   UUGGCACAUUUGAAGAUUAGACUU   1
  ||||*||*||||||*|||||||||
targets:2809   AACCAUGCAAACUUAUAAUCUGAA   2832

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g09650, chloroplastic (LOC103651307), mRNA NA coding protein psRNATarget
BT066551.1
ncRNA:24   UUGGCACAUUUGAAGAUUAGACUU   1
  ||=|-|||**=|||||||||||||
targets:1612   AAUC-UGUUUGCUUCUAAUCUGAA   1634

3.0 Zea mays full-length cDNA clone ZM_BFb0026N22 mRNA, complete cds NA coding protein psRNATarget
NM_001175860.1
ncRNA:24   UUGGCACAUUUGAAGAUUAGACUU   1
  ||=|-|||**=|||||||||||||
targets:1612   AAUC-UGUUUGCUUCUAAUCUGAA   1634

3.0 Zea mays Endosomal targeting BRO1-like domain-containing protein (LOC100383198), mRNA NA coding protein psRNATarget
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