Search result

BaseInfo

ncRNA ID	novel_zma_miR2080
Species	Zea mays
Class	miRNA
Genome position	Chr4:137404987-137405107 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AGGGCUAGUUUGGGAAUACCAAUU - 24
Stem-loop(if miRNA)	--A                AC      CU          A      C   -U     AAUA    GGGCUAGUUUGGGAAU  CAAUUU  CAAGGGAUUU UGUUUU CCA  GGAAA    A    ||||||||||||||||  ||||||  |||||||||| |||||| |||  |||||    UCCGAUCAAACCCUUG  GUUAAA  GUUCCCUAAA GUAAAA GGU  CCUUU    A AAA                GA      AG          A      A   UU     AAUC
Stem-loop sequence	AGGGCUAGUUUGGGAAUACCAAUUUCUCAAGGGAUUUAUGUUUUCCCAUGGAAAAAUAAACUAAUUUCCUUUGGAAAAAUGAAAAUCCCUUGGAAAAUUGAGGUUCCCAAACUAGCCUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008665186.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:2   AAUUAGUGUUCCCAAACUAGCCCU   25 Target Full Sequence	1.0	PREDICTED: Zea mays probable galacturonosyltransferase-like 3 (LOC103641870), mRNA	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:1644   AAUUAGUGUUCCCAAACUAGCCCU   1667 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:1558   AAUUAGUGUUCCCAAACUAGCCCU   1581 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:1515   AAUUAGUGUUCCCAAACUAGCCCU   1538 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:1514   AAUUAGUGUUCCCAAACUAGCCCU   1537 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=|||||||||||||||| targets:1471   AAUUAGUGUUCCCAAACUAGCCCU   1494 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:1449   AAAUGGUGUUCCCAAACUAGCCCU   1472 Target Full Sequence	1.0	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:1447   AAAUGGUGUUCCCAAACUAGCCCU   1470 Target Full Sequence	1.0	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
JB166724.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2559767	NA	coding protein	psRNATarget
HI406263.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238393.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=|||||||||||||||| targets:105   AAAUGGUGUUCCCAAACUAGCCCU   128 Target Full Sequence	1.0	Sequence 4388 from Patent EP2985353	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||||*=|||||||||||||||* targets:1779   AAUUGGGGUUCCCAAACUAGCCCK   1802 Target Full Sequence	3.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=|||||||||||||||| targets:1964   AAAUGGGGUUCCCAAACUAGCCCU   1987 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=|||||||||||||||| targets:2559   AAAUGGAGUUCCCAAACUAGCCCU   2582 Target Full Sequence	2.0	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=|||||||||||||||| targets:455   AAAUGGAGUUCCCAAACUAGCCCU   478 Target Full Sequence	2.0	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675357.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||||*||=||||||||||||*||| targets:205   AAUUAGUGUUCCCAAACUAGGCCU   228 Target Full Sequence	2.5	PREDICTED: Zea mays UNE1 (LOC103649618), mRNA	NA	coding protein	psRNATarget
XM_008662239.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*|||=||||||||||||| targets:1908   AAAUGGGAUUUCCAAACUAGCCCU   1931 Target Full Sequence	2.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544055.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*|||=||||||||||||| targets:1888   AAAUGGGAUUUCCAAACUAGCCCU   1911 Target Full Sequence	2.0	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069551.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   |||||**=|||||||||||||||| targets:321   AAUUGAGGUUCCCAAACUAGCCCU   344 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||||=||*||||||||||||| targets:324   AAAUGGUGUUACCAAACUAGCCCU   347 Target Full Sequence	2.0	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
EU951374.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=||=||||||||||||| targets:414   AAAUGGGGUUUCCAAACUAGCCCU   437 Target Full Sequence	3.0	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=|||||||||||||||* targets:5579   AAAUGGGGUUCCCAAACUAGCCCG   5602 Target Full Sequence	3.0	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   *||||**=|||||||||||||||| targets:3557   UAUUGUGGUUCCCAAACUAGCCCU   3580 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   *||||**=|||||||||||||||| targets:3522   UAUUGUGGUUCCCAAACUAGCCCU   3545 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008679616.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   =|||*|*=||=||||||||||||| targets:1220   GAUUUGAGUUUCCAAACUAGCCCU   1243 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103652675 (LOC103652675), mRNA	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   =|||*|*=||=||||||||||||| targets:88   GAUUUGAGUUUCCAAACUAGCCCU   111 Target Full Sequence	3.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_008652775.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||**|||=||||||||*||||||| targets:15   AAACGGUGUUCCCAAAGUAGCCCU   38 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100217039 (LOC100217039), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542480.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||*|=||*||||||||||||| targets:3723   AAAUGCUGUUGCCAAACUAGCCCU   3746 Target Full Sequence	3.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542481.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||*|=||*||||||||||||| targets:3687   AAAUGCUGUUGCCAAACUAGCCCU   3710 Target Full Sequence	3.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542482.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||*|=||*||||||||||||| targets:3675   AAAUGCUGUUGCCAAACUAGCCCU   3698 Target Full Sequence	3.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542483.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||*|=||*||||||||||||| targets:3186   AAAUGCUGUUGCCAAACUAGCCCU   3209 Target Full Sequence	3.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||*=||*||||||||||||| targets:1503   AAAUGGGGUUGCCAAACUAGCCCU   1526 Target Full Sequence	3.0	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
XM_008680878.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|*||=||*||||||||||||| targets:1604   AAAUAGUGUUGCCAAACUAGCCCU   1627 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin protein ligase RIE1 (LOC103654076), mRNA	NA	coding protein	psRNATarget
LQ238951.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||**=|||||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	3.0	Sequence 4946 from Patent EP2985353	NA	coding protein	psRNATarget
HI406821.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||**=|||||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	3.0	Sequence 4946 from Patent EP2074227	NA	coding protein	psRNATarget
JB167282.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*||**=|||||||||||||||| targets:107   AAAUGAGGUUCCCAAACUAGCCCU   130 Target Full Sequence	3.0	Sequence 4946 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   **||*|||*|=||||||||||||| targets:737   UUUUUGUACUUCCAAACUAGCCCU   760 Target Full Sequence	2.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   **||*|||*|=||||||||||||| targets:737   UUUUUGUACUUCCAAACUAGCCCU   760 Target Full Sequence	2.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   **||*|||*|=||||||||||||| targets:737   UUUUUGUACUUCCAAACUAGCCCU   760 Target Full Sequence	2.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651784.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   **||*|||*|=||||||||||||| targets:737   UUUUUGUACUUCCAAACUAGCCCU   760 Target Full Sequence	2.0	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
AY110586.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ***|||*=|||||||||||||||* targets:5582   NNNUGGGGUUCCCAAACUAGCCCG   5605 Target Full Sequence	3.0	Zea mays CL1800_1 mRNA sequence	NA	coding protein	psRNATarget
BT016468.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   ||*|||**|||||||||||||||* targets:1000   AACUGGGCUUCCCAAACUAGCCCA   1023 Target Full Sequence	3.0	Zea mays clone Contig301 mRNA sequence	NA	coding protein	psRNATarget
EU955577.1	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   *||--|*=||=||||||||||||| targets:2159   UAU--GAGUUUCCAAACUAGCCCU   2180 Target Full Sequence	3.0	Zea mays clone 1537616 kelch motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154017.2	ncRNA:24   UUAACCAUAAGGGUUUGAUCGGGA   1   *||--|*=||=||||||||||||| targets:2158   UAU--GAGUUUCCAAACUAGCCCU   2179 Target Full Sequence	3.0	Zea mays kelch motif family protein (LOC100281098), mRNA	NA	coding protein	psRNATarget