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BaseInfo

ncRNA ID	osa-miR2876-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:17008975-17009155 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	151 - AAUUGCUGGCAGCACUGUUUA - 171
Stem-loop(if miRNA)	UUUUUGAGG               C           A            AUAAUU   CCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACU          AAAUUGCUGGCAGCA UGUUUAUAUAG AAUUUCUGUAAA      GCU                                     G          ||||||||||||||| ||||||||||| ||||||||||||      |||          UUUAACGACCGUUGU ACAAGUAUAUC UUAAGGACAUUU      CGU                                     U --------G               C           C            ---GUU   UCUUACAAAUCCCUUUGAAAAUUCCUUUCUUUGUAGA
Stem-loop sequence	UUUUUGAGGAAAUUGCUGGCAGCACUGUUUAUAUAGAAAUUUCUGUAAAAUAAUUGCUCCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACUGUAGAUGUUUCUUUCCUUAAAAGUUUCCCUAAACAUUCUUGCUUGUUUACAGGAAUUCCUAUAUGAACACUGUUGCCAGCAAUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404015.1	ncRNA:21   AUUUGUCACGACGGUCGUUAA   1   |=||||*||=||||||||||| targets:154   UGAACACUGUUGCCAGCAAUU   174 Target Full Sequence	2.5	Sequence 2140 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236145.1	ncRNA:21   AUUUGUCACGACGGUCGUUAA   1   |=||||*||=||||||||||| targets:154   UGAACACUGUUGCCAGCAAUU   174 Target Full Sequence	2.5	Sequence 2140 from Patent EP2985353	NA	coding protein	psRNATarget
JB164476.1	ncRNA:21   AUUUGUCACGACGGUCGUUAA   1   |=||||*||=||||||||||| targets:154   UGAACACUGUUGCCAGCAAUU   174 Target Full Sequence	2.5	Sequence 2140 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).
2	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).