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BaseInfo

ncRNA ID	novel_zma_miR2078
Species	Zea mays
Class	miRNA
Genome position	Chr2:134182099-134182312 [+]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	191 - CGCUGUCGUCGGUACUGAGGUGGU - 214
Stem-loop(if miRNA)	--  U    C  -    G    U       G    A  GGGGGGGUCGCACAACACAUCGUACGCCGGGAGGGCGGUACUCGUGUUUUGGGACGGUCCCGUUCUCGUU   CG CCUC GU CCGG CGAC GUGGCCG CUGC CU                                                                      C   || |||| || |||| |||| ||||||| |||| ||                                                                      U   GU GGAG CA GGCU GCUG CGCCGGU GAUG GU                                                                      C UG  -    U  U    -    U       G    G  GGUUGUGGCGUGGUCGCUCGCCGCCGGCGGGGUUUCGCGUGGCCAUCCAGGAGUGAGGACAAGAGCGGUG
Stem-loop sequence	CGUCCUCCGUCCGGGCGACUGUGGCCGGCUGCACUGGGGGGGUCGCACAACACAUCGUACGCCGGGAGGGCGGUACUCGUGUUUUGGGACGGUCCCGUUCUCGUUCUCGUGGCGAGAACAGGAGUGAGGACCUACCGGUGCGCUUUGGGGCGGCCGCCGCUCGCUGGUGCGGUGUUGGUGGGUAGGUGGCCGCUGUCGUCGGUACUGAGGUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541626.1	ncRNA:24   UGGUGGAGUCAUGGCUGCUGUCGC   1   ||||||||||*||||||||||||* targets:38   ACCACCUCAGCACCGACGACAGCA   61 Target Full Sequence	2.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109941128), mRNA	NA	coding protein	psRNATarget
BT069062.2	ncRNA:24   UGGUGGAGUCAUGGCUGCUGUCGC   1   ||||||||||**|||||||||||| targets:825   ACCACCUCAGCUCCGACGACAGCG   848 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0152M17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176667.1	ncRNA:24   UGGUGGAGUCAUGGCUGCUGUCGC   1   ||||||||||**|||||||||||| targets:825   ACCACCUCAGCUCCGACGACAGCG   848 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384065 (LOC100384065), mRNA	NA	coding protein	psRNATarget
EU945214.1	ncRNA:24   UGGU---GGAGUCAUGGCUGCUGUCGC   1   *|||---|||||*|||||||||||*|| targets:365   CCCAUUUCCUCAUUACCGACGACAUCG   391 Target Full Sequence	2.5	Zea mays clone 244700 mRNA sequence	NA	coding protein	psRNATarget
EU975714.1	ncRNA:24   UGGU---GGAGUCAUGGCUGCUGUCGC   1   *|||---|||||*|||||||||||*|| targets:432   CCCAUUUCCUCAAUACCGACGACAUCG   458 Target Full Sequence	2.5	Zea mays clone 497879 mRNA sequence	NA	coding protein	psRNATarget
EU964664.1	ncRNA:24   UGGU---GGAGUCAUGGCUGCUGUCGC   1   *|||---|||||*|||||||||||*|| targets:508   CCCAUUUCCUCAUUACCGACGACAUCG   534 Target Full Sequence	2.5	Zea mays clone 280699 mRNA sequence	NA	coding protein	psRNATarget
EU948674.1	ncRNA:24   UGGU---GGAGUCAUGGCUGCUGUCGC   1   *|||---|||||*|||||||||||*|| targets:247   CCCAUUUCCUCAUUACCGACGACAUCG   273 Target Full Sequence	2.5	Zea mays clone 381761 mRNA sequence	NA	coding protein	psRNATarget