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BaseInfo

ncRNA ID	novel_zma_miR2070
Species	Zea mays
Class	miRNA
Genome position	Chr4:136171130-136171185 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AAAGAGUUCUUUGCCGAGUGUCAA - 24
Stem-loop(if miRNA)	--       --                AC   AAAGAGU  UCUUUGCCGAGUGUCA  U   |||||||  ||||||||||||||||   UUUCUCA  AGAAACGGCUCACAGU  A CG       GA                GU
Stem-loop sequence	AAAGAGUUCUUUGCCGAGUGUCAACUAUGUGACACUCGGCAAAGAAGACUCUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   |||||||||||||||||=|||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   *|*||||||||||||||=|||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   AA--CUGUGAGCCGUUUCUU-GAGAAA   1   ||--|=||||||||||||||-|||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   |||||||||||||||||=|||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   *|*||||||||||||||=|||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   AA--CUGUGAGCCGUUUCUU-GAGAAA   1   ||--|=||||||||||||||-|||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   |||||||||||||||||=|||||| targets:50   UUGACACUCGGCAAAGAGCUCUUU   73 Target Full Sequence	1.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   *|*||||||||||||||=|||||| targets:90   AUAACACUCGGCAAAGAGCUCUUU   113 Target Full Sequence	1.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   AA--CUGUGAGCCGUUUCUU-GAGAAA   1   ||--|=||||||||||||||-|||||| targets:7   UUCGGGCACUCGGCAAAGAAGCUCUUU   33 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   *||=|||||||||||||=|||||| targets:1159   GUGGCACUCGGCAAAGAGCUCUUU   1182 Target Full Sequence	1.5	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   AACUGUGAGCCGUUUCUUGAGAAA   1   ||*=|||||||||||||||||||| targets:1124   UUAGCACUCGGCAAAGAACUCUUU   1147 Target Full Sequence	0.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   AAC--------UGUGAGCCGUUUCUUGAGAAA   1   |||--------||||||||||||||=|||||| targets:1962   UUGGAGAAAAAACACUCGGCAAAGAGCUCUUU   1993 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   AAC--------UGUGAGCCGUUUCUUGAGAAA   1   |||--------||||||||||||||=|||||| targets:1962   UUGGAGAAAAAACACUCGGCAAAGAGCUCUUU   1993 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   AACUGUGAGCCGUUUCUU-GAGAAA   1   |||-||||||||||||||-|||||| targets:1245   UUG-CACUCGGCAAAGAAGCUCUUU   1268 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   AACUGUGAGCCGUUUCUU-GAGAAA   1   |||-||||||||||||||-|||||| targets:1295   UUG-CACUCGGCAAAGAAGCUCUUU   1318 Target Full Sequence	3.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget