ncRNA ID | osa-miR2876-3p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:17008975-17009155 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - UUCCUAUAUGAACACUGUUGC - 31 |
Stem-loop(if miRNA) |
UUUUUGAGG C A AUAAUU CCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACU AAAUUGCUGGCAGCA UGUUUAUAUAG AAUUUCUGUAAA GCU G ||||||||||||||| ||||||||||| |||||||||||| ||| UUUAACGACCGUUGU ACAAGUAUAUC UUAAGGACAUUU CGU U --------G C C ---GUU UCUUACAAAUCCCUUUGAAAAUUCCUUUCUUUGUAGA |
Stem-loop sequence | UUUUUGAGGAAAUUGCUGGCAGCACUGUUUAUAUAGAAAUUUCUGUAAAAUAAUUGCUCCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACUGUAGAUGUUUCUUUCCUUAAAAGUUUCCCUAAACAUUCUUGCUUGUUUACAGGAAUUCCUAUAUGAACACUGUUGCCAGCAAUUUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK067881.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:J013122M10, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK070396.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J023049G10, full insert sequence | NA | coding protein | psRNATarget |
1 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |
2 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |