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BaseInfo

ncRNA ID osa-miR2876-3p
Species Oryza sativa
Class miRNA
Genome position Chr6:17008975-17009155 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UUCCUAUAUGAACACUGUUGC - 31
Stem-loop(if miRNA) UUUUUGAGG               C           A            AUAAUU   CCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACU
         AAAUUGCUGGCAGCA UGUUUAUAUAG AAUUUCUGUAAA      GCU                                     G
         ||||||||||||||| ||||||||||| ||||||||||||      |||
         UUUAACGACCGUUGU ACAAGUAUAUC UUAAGGACAUUU      CGU                                     U
--------G               C           C            ---GUU   UCUUACAAAUCCCUUUGAAAAUUCCUUUCUUUGUAGA
Stem-loop sequence UUUUUGAGGAAAUUGCUGGCAGCACUGUUUAUAUAGAAAUUUCUGUAAAAUAAUUGCUCCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACUGUAGAUGUUUCUUUCCUUAAAAGUUUCCCUAAACAUUCUUGCUUGUUUACAGGAAUUCCUAUAUGAACACUGUUGCCAGCAAUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK067881.1
ncRNA:21   CGUUGUCACAAGUAUAUCCUU   1
  ***|=||*|||||||||||||
targets:1044   AAUAUAGAGUUCAUAUAGGAA   1064

3.0 Oryza sativa Japonica Group cDNA clone:J013122M10, full insert sequence NA coding protein psRNATarget
AK070396.1
ncRNA:21   CGUUGUCACAAGUAUAUCCUU   1
  **|||||*||*||||||||||
targets:2154   AAAACAGAGUCCAUAUAGGAA   2174

2.5 Oryza sativa Japonica Group cDNA clone:J023049G10, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
2 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).