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BaseInfo

ncRNA ID	novel_zma_miR2066
Species	Zea mays
Class	miRNA
Genome position	Chr10:125914897-125914951 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	32 - CGGACUGUCCGGUGGAGCACCGAA - 55
Stem-loop(if miRNA)	--     U        GA      A     CGGAC GUCCGGUG  GCACCG ACA   ||||| ||||||||  |||||| ||G   GCCUG UAGGCCAC  UGUGGC UGU UG     U        AC      C
Stem-loop sequence	CGGACUGUCCGGUGGAGCACCGAACAGUGUCCGGUGUCACACCGGAUUGUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069074.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||||=|||||||||||||| targets:678   UCCGGUGCUUCACCGGACAGUCCG   701 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
JB170644.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
HI409038.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
HI410183.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
HI408938.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
JB169499.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB169399.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
HI409440.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:28   UCCGGUGCACCACCGGACAGUCCG   51 Target Full Sequence	1.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:722   UCCGGUGCACCACCGGACAGUCCG   745 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:814   UCCGGUGCACCACCGGACAGUCCG   837 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:814   UCCGGUGCACCACCGGACAGUCCG   837 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:848   UCCGGUGCACCACCGGACAGUCCG   871 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*|||||*||||||||| targets:723   UCCGGUGCACCACCAGACAGUCCG   746 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:798   UCCGGUGCACCACCGGACAGUCCG   821 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:798   UCCGGUGCACCACCGGACAGUCCG   821 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:661   UCCGGUGCACCACCGGACAGUCCG   684 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:661   UCCGGUGCACCACCGGACAGUCCG   684 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349964.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:2990   UCCGGUGCGCCACCGGACAGUCCG   3013 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278112 (IDP592), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*||||||||||||||| targets:4709   UCCGGUGCACCACCGGACAGUCCG   4732 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
JB170370.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*||||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCG   53 Target Full Sequence	1.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
HI409909.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*||||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCG   53 Target Full Sequence	1.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*||||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCG   53 Target Full Sequence	1.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*|||||||||||||=| targets:705   UCCGGUGCACCACCGGACAGUCUG   728 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*|||||||||||||=| targets:705   UCCGGUGCACCACCGGACAGUCUG   728 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*=|||||||||||||| targets:351   UCCGGUGCCUCACCGGACAGUCCG   374 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*||||||||||||||| targets:530   GUCUGGUGCACCACCGGACAGUCCG   554 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AAG-----CCACGAGGUGGCCUGUCAGGC   1   |||-----||||***|||||||||||||| targets:171   UUCUGUCGGGUGGAGCACCGGACAGUCCG   199 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*=|||||||||||||| targets:1466   GUCUGGUGCCUCACCGGACAGUCCG   1490 Target Full Sequence	2.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
BT016820.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||||||*|||||||||*||||| targets:181   UCCGGUGCACCACCGGACUGUCCG   204 Target Full Sequence	2.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||*|||*||||||||||||||| targets:1025   UCCGAUGCGCCACCGGACAGUCCG   1048 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*||*|||*||||||||||||||| targets:1396   UCCGAUGCGCCACCGGACAGUCCG   1419 Target Full Sequence	1.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||**||||||||||||||| targets:645   UCCGGUGAACCACCGGACAGUCCG   668 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-||||**||||||||||||||| targets:26   GUCUGGUGGCCCACCGGACAGUCCG   50 Target Full Sequence	2.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-||||**||||||||||||||| targets:26   GUCUGGUGGCCCACCGGACAGUCCG   50 Target Full Sequence	2.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-||||**||||||||||||||| targets:26   GUCUGGUGGCCCACCGGACAGUCCG   50 Target Full Sequence	2.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   AAGC-CACGAGGUGGCCUGUCAGGC   1   *|||-|||*|*|||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCG   168 Target Full Sequence	2.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   AAGC-CACGAGGUGGCCUGUCAGGC   1   *|||-|||*|*|||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCG   168 Target Full Sequence	2.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   AAGC-CACGAGGUGGCCUGUCAGGC   1   *|||-|||*|*|||||||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCG   168 Target Full Sequence	2.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
EU947420.1	ncRNA:24   AAG-CCACGAGGUGGCCUGUCAGGC   1   *||-|||||*|||||||||*||||| targets:574   GUCUGGUGCACCACCGGACUGUCCG   598 Target Full Sequence	2.5	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||*|*|||||||||||||* targets:29   UCCGGUGGUGCACCGGACAGUCCA   52 Target Full Sequence	3.0	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||*|*|||||||||||||* targets:29   UCCGGUGGUGCACCGGACAGUCCA   52 Target Full Sequence	3.0	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||*|*|||||||||||||* targets:29   UCCGGUGGUGCACCGGACAGUCCA   52 Target Full Sequence	3.0	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
EU945126.1	ncRNA:24   AAG---CCACGAGGUGGCCUGUCAGGC   1   *||---|||||||*|||||||*||||| targets:782   GUCCGGGGUGCUCGACCGGACCGUCCG   808 Target Full Sequence	2.5	Zea mays clone 241908 mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||***|||||||||||||| targets:795   UCCGGUGGCACACCGGACAGUCCG   818 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   AAGCCACGAGGUGGCCUGUCAGGC   1   |*|||||***|||||||||||||| targets:92   UCCGGUGGCACACCGGACAGUCCG   115 Target Full Sequence	3.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget