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BaseInfo

ncRNA ID	novel_zma_miR2062
Species	Zea mays
Class	miRNA
Genome position	Chr1:8108302-8108406 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	24
Mature sequence(if miRNA)	1 - CUCCCAAACUAGCACUAAAUGACG - 24
Stem-loop(if miRNA)	--     CUA  G                 AAAAU GAAAGGGAUUGAAGGGACU   UCAUU   AG GUUAGUUUGGGAGUCAC     C                   A   |||||   || |||||||||||||||||     |   AGUAA   UC CGAUCAAACCCUCGGUG     U                   G GC     --A  A                 ---CU UGACCUCCAUUUUACAGUA
Stem-loop sequence	UCAUUCUAAGGGUUAGUUUGGGAGUCACAAAAUCGAAAGGGAUUGAAGGGACUAGAUGACAUUUUACCUCCAGUUUCGUGGCUCCCAAACUAGCACUAAAUGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY104435.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =**|||||||||||*||||||||| targets:534   UUCCAUUUAGUGCUUGUUUGGGAG   557 Target Full Sequence	1.5	Zea mays PCO088700 mRNA sequence	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   GCA----GUAAAUCACGAUCAAACCCUC   1   =||----|||||||*||||||||||||* targets:278   UGUUCUCCAUUUAGGGCUAGUUUGGGAA   305 Target Full Sequence	2.0	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
AY109112.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **||||||||*||||||*|||||| targets:862   AAUCAUUUAGGGCUAGUCUGGGAG   885 Target Full Sequence	2.5	Zea mays PCO134243 mRNA sequence	NA	coding protein	psRNATarget
BT018904.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **||||||||*||||||*|||||| targets:1696   AAUCAUUUAGGGCUAGUCUGGGAG   1719 Target Full Sequence	2.5	Zea mays clone EL01T0208E01.d mRNA sequence	NA	coding protein	psRNATarget
EU950786.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =||=*|||||*||||||||||||* targets:278   UGUUUUUUAGAGCUAGUUUGGGAA   301 Target Full Sequence	2.0	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget
XM_020552501.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =||=*|||||*||||||||||||* targets:3143   UGUUUUUUAGAGCUAGUUUGGGAA   3166 Target Full Sequence	2.0	PREDICTED: Zea mays polyadenylation and cleavage factor homolog 4-like (LOC103653026), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |||**|||||*||||||||||||* targets:54   CGUAUUUUAGGGCUAGUUUGGGAA   77 Target Full Sequence	2.0	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
EU967323.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |||**|||||*||||||||||||* targets:868   CGUAUUUUAGGGCUAGUUUGGGAA   891 Target Full Sequence	2.0	Zea mays clone 301481 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150835.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |||**|||||*||||||||||||* targets:868   CGUAUUUUAGGGCUAGUUUGGGAA   891 Target Full Sequence	2.0	Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), mRNA	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |||**|||||*||||||||||||* targets:901   CGUAUUUUAGGGCUAGUUUGGGAA   924 Target Full Sequence	2.0	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   ***||||*||*||||||||||||| targets:124   ACACAUUAAGGGCUAGUUUGGGAG   147 Target Full Sequence	2.0	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
XM_008664818.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **|||||*||*||||||||||||* targets:4403   ACUCAUUAAGGGCUAGUUUGGGAA   4426 Target Full Sequence	3.0	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546085.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **|||||*||*||||||||||||* targets:4422   ACUCAUUAAGGGCUAGUUUGGGAA   4445 Target Full Sequence	3.0	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020545884.1	ncRNA:24   GCAG---UAAAUCACGAUCAAACCCUC   1   =|||---|||||**||||||||||||* targets:1906   UGUCCAAAUUUAAGGCUAGUUUGGGAA   1932 Target Full Sequence	3.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA	NA	coding protein	psRNATarget
XM_008675357.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =*|*=|||||*||||||||||||* targets:102   UAUGGUUUAGGGCUAGUUUGGGAA   125 Target Full Sequence	2.0	PREDICTED: Zea mays UNE1 (LOC103649618), mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **||*|||||*||||||||||*|| targets:1790   AAUCCUUUAGGGCUAGUUUGGAAG   1813 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143020.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |**|*|||||*||||||||||||* targets:1590   CAACCUUUAGGGCUAGUUUGGGAA   1613 Target Full Sequence	2.0	Zea mays CBS domain-containing protein CBSCBSPB2 (LOC100216607), mRNA	NA	coding protein	psRNATarget
BT037036.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |**|*|||||*||||||||||||* targets:1590   CAACCUUUAGGGCUAGUUUGGGAA   1613 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0152E23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154524.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =**|*|||||*||||||||||||* targets:1867   UCCCUUUUAGGGCUAGUUUGGGAA   1890 Target Full Sequence	2.0	Zea mays DHHC zinc finger domain containing protein (LOC100281605), mRNA	NA	coding protein	psRNATarget
EU957224.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =**|*|||||*||||||||||||* targets:1867   UCCCUUUUAGGGCUAGUUUGGGAA   1890 Target Full Sequence	2.0	Zea mays clone 1586117 DHHC zinc finger domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669712.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   =**|*|||||*||||||||||||* targets:2096   UCCCUUUUAGGGCUAGUUUGGGAA   2119 Target Full Sequence	2.0	PREDICTED: Zea mays DHHC zinc finger domain containing protein (LOC100281605), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678433.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   |**|*|||||*||||||||||||* targets:2063   CAACCUUUAGGGCUAGUUUGGGAA   2086 Target Full Sequence	2.0	PREDICTED: Zea mays CBS domain-containing protein CBSCBSPB2 (LOC100216607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ108805.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **|==*||||*||||||||||||* targets:388   AUUUGAUUAGGGCUAGUUUGGGAA   411 Target Full Sequence	3.0	TSA: Zea mays contig44464, mRNA sequence	NA	coding protein	psRNATarget
EU948823.1	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   **|==*||||*||||||||||||* targets:691   AUUUGAUUAGGGCUAGUUUGGGAA   714 Target Full Sequence	3.0	Zea mays clone 386492 mRNA sequence	NA	coding protein	psRNATarget
XM_008651784.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   *|*|**|||||||||*|||||||| targets:636   AGACCCUUAGUGCUAAUUUGGGAG   659 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   *|*|**|||||||||*|||||||| targets:636   AGACCCUUAGUGCUAAUUUGGGAG   659 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   *|*|**|||||||||*|||||||| targets:636   AGACCCUUAGUGCUAAUUUGGGAG   659 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:24   GCAGUAAAUCACGAUCAAACCCUC   1   *|*|**|||||||||*|||||||| targets:636   AGACCCUUAGUGCUAAUUUGGGAG   659 Target Full Sequence	2.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget