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BaseInfo

ncRNA ID novel_zma_miR2061
Species Zea mays
Class miRNA
Genome position Chr1:12395752-12395804 [-]
Reference genome RefGen_v4
Source SRR2089711
Length 24
Mature sequence(if miRNA) 30 - AAGUUCUAGUGCAUUCAAACACCC - 53
Stem-loop(if miRNA) --A                   A CC
   AGUUCUAGUGCAUUCAAAC C  U
   ||||||||||||||||||| |  C
   UCGAGAUUACGUAAGUUUG G  U
UAA                   C AU
Stem-loop sequence AAGUUCUAGUGCAUUCAAACACCCUCUUAGCGUUUGAAUGCAUUAGAGCUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402965.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:96   GGGUGUUUGAAUGCACUAGAACUA   119

1.0 Sequence 1090 from Patent EP2074227 NA coding protein psRNATarget
JB163426.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:96   GGGUGUUUGAAUGCACUAGAACUA   119

1.0 Sequence 1090 from Patent EP2559767 NA coding protein psRNATarget
LQ235095.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:96   GGGUGUUUGAAUGCACUAGAACUA   119

1.0 Sequence 1090 from Patent EP2985353 NA coding protein psRNATarget
HI403037.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:12   GGGUGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1162 from Patent EP2074227 NA coding protein psRNATarget
JB163498.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:12   GGGUGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1162 from Patent EP2559767 NA coding protein psRNATarget
LQ235167.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:12   GGGUGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1162 from Patent EP2985353 NA coding protein psRNATarget
XM_008663424.2
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:936   GGGUGUUUGAAUGCACUAGAACUA   959

1.0 PREDICTED: Zea mays MED7 transcription factor (MED7.2), transcript variant X1, mRNA NA coding protein psRNATarget
BT087743.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:967   GGGUGUUUGAAUGCACUAGAACUA   990

1.0 Zea mays full-length cDNA clone ZM_BFb0181F12 mRNA, complete cds NA coding protein psRNATarget
BT038069.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:1278   GGGUGUUUGAAUGCACUAGAACUA   1301

1.0 Zea mays full-length cDNA clone ZM_BFb0210C15 mRNA, complete cds NA coding protein psRNATarget
NM_001143541.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:1278   GGGUGUUUGAAUGCACUAGAACUA   1301

1.0 Zea mays Amino acid kinase family protein (LOC100217180), mRNA NA coding protein psRNATarget
BT042628.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:1118   GGGUGUUUGAAUGCACUAGAACUA   1141

1.0 Zea mays full-length cDNA clone ZM_BFb0383P13 mRNA, complete cds NA coding protein psRNATarget
NM_001148622.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:1118   GGGUGUUUGAAUGCACUAGAACUA   1141

1.0 Zea mays MED7 transcription factor (MED7.2), mRNA NA coding protein psRNATarget
BT084681.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||||*
targets:337   GGGUGUUUGAAUGCACUAGAACUA   360

1.0 Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds NA coding protein psRNATarget
LQ242109.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:71   GGGUGUUUGAAUGCACUAGAGCUA   94

2.5 Sequence 8104 from Patent EP2985353 NA coding protein psRNATarget
HI409979.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:71   GGGUGUUUGAAUGCACUAGAGCUA   94

2.5 Sequence 8104 from Patent EP2074227 NA coding protein psRNATarget
JB170440.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:71   GGGUGUUUGAAUGCACUAGAGCUA   94

2.5 Sequence 8104 from Patent EP2559767 NA coding protein psRNATarget
JB163468.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:7   GGGUGUUUGAAUGCACUAGAGCUG   30

2.5 Sequence 1132 from Patent EP2559767 NA coding protein psRNATarget
LQ235137.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:7   GGGUGUUUGAAUGCACUAGAGCUG   30

2.5 Sequence 1132 from Patent EP2985353 NA coding protein psRNATarget
HI403007.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:7   GGGUGUUUGAAUGCACUAGAGCUG   30

2.5 Sequence 1132 from Patent EP2074227 NA coding protein psRNATarget
HI403063.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:11   GGGUGUUUGAAUGCACUAGAGCUA   34

2.5 Sequence 1188 from Patent EP2074227 NA coding protein psRNATarget
JB163524.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:11   GGGUGUUUGAAUGCACUAGAGCUA   34

2.5 Sequence 1188 from Patent EP2559767 NA coding protein psRNATarget
LQ235193.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:11   GGGUGUUUGAAUGCACUAGAGCUA   34

2.5 Sequence 1188 from Patent EP2985353 NA coding protein psRNATarget
HI403139.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:12   GGGUGUUUGAAUGCACUAGAGCUA   35

2.5 Sequence 1264 from Patent EP2074227 NA coding protein psRNATarget
LQ235269.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:12   GGGUGUUUGAAUGCACUAGAGCUA   35

2.5 Sequence 1264 from Patent EP2985353 NA coding protein psRNATarget
JB163600.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:12   GGGUGUUUGAAUGCACUAGAGCUA   35

2.5 Sequence 1264 from Patent EP2559767 NA coding protein psRNATarget
BT083749.2
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:1441   GGGUGUUUGAAUGCACUAGAGCUA   1464

2.5 Zea mays full-length cDNA clone ZM_BFb0035A22 mRNA, complete cds NA coding protein psRNATarget
EU953408.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||=|||*
targets:1282   GGGUGUUUGAAUGCACUAGGACUA   1305

2.5 Zea mays clone 1408713 mRNA sequence NA coding protein psRNATarget
NM_001175005.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:849   GGGUGUUUGAAUGCACUAGAGCUA   872

2.5 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
BT063644.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:849   GGGUGUUUGAAUGCACUAGAGCUA   872

2.5 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
XM_020542504.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||||||||||||||||||||=|*
targets:2341   GGGUGUUUGAAUGCACUAGAAUUA   2364

2.5 PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:3610   GGGUGUUUGAAUGCACUAGAGCUA   3633

2.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||||=||*
targets:3610   GGGUGUUUGAAUGCACUAGAGCUA   3633

2.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
LQ235100.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|||||||||||||||||||=||*
targets:9   AGGUGUUUGAAUGCACUAGAGCUA   32

2.5 Sequence 1095 from Patent EP2985353 NA coding protein psRNATarget
HI402970.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|||||||||||||||||||=||*
targets:9   AGGUGUUUGAAUGCACUAGAGCUA   32

2.5 Sequence 1095 from Patent EP2074227 NA coding protein psRNATarget
JB163431.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|||||||||||||||||||=||*
targets:9   AGGUGUUUGAAUGCACUAGAGCUA   32

2.5 Sequence 1095 from Patent EP2559767 NA coding protein psRNATarget
HI409554.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGGGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 7679 from Patent EP2074227 NA coding protein psRNATarget
JB170015.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGGGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 7679 from Patent EP2559767 NA coding protein psRNATarget
LQ241684.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGGGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 7679 from Patent EP2985353 NA coding protein psRNATarget
JB169053.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGCGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 6717 from Patent EP2559767 NA coding protein psRNATarget
LQ240722.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGCGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 6717 from Patent EP2985353 NA coding protein psRNATarget
HI408592.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:6   GGGCGUUUGAAUGCACUAGAACUA   29

1.0 Sequence 6717 from Patent EP2074227 NA coding protein psRNATarget
LQ235112.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||*||||*
targets:12   GGGUGUUUGAAUGCACUAUAACUA   35

2.5 Sequence 1107 from Patent EP2985353 NA coding protein psRNATarget
JB163443.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||*||||*
targets:12   GGGUGUUUGAAUGCACUAUAACUA   35

2.5 Sequence 1107 from Patent EP2559767 NA coding protein psRNATarget
HI402982.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||*||||*
targets:12   GGGUGUUUGAAUGCACUAUAACUA   35

2.5 Sequence 1107 from Patent EP2074227 NA coding protein psRNATarget
HI403030.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:12   GGGCGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1155 from Patent EP2074227 NA coding protein psRNATarget
LQ235160.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:12   GGGCGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1155 from Patent EP2985353 NA coding protein psRNATarget
JB163491.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  |||*|||||||||||||||||||*
targets:12   GGGCGUUUGAAUGCACUAGAACUA   35

1.0 Sequence 1155 from Patent EP2559767 NA coding protein psRNATarget
BT016897.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||*||||*
targets:128   GGGUGUUUGAAUGCACUAAAACUA   151

2.5 Zea mays clone Contig730 mRNA sequence NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ||||||||||||||||||*||||*
targets:1127   GGGUGUUUGAAUGCACUAAAACUG   1150

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CC--CACAAACUUACGUGAUCUUGAA   1
  ||--||||||||||||||||||=||*
targets:1950   GGUUGUGUUUGAAUGCACUAGAGCUA   1975

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
LQ239048.1
ncRNA:24   CCCA-CAAACUUACGUGAUCUUGAA   1
  ||||-||||||||||||||||=||*
targets:4   GGGUUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 5043 from Patent EP2985353 NA coding protein psRNATarget
JB167379.1
ncRNA:24   CCCA-CAAACUUACGUGAUCUUGAA   1
  ||||-||||||||||||||||=||*
targets:4   GGGUUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 5043 from Patent EP2559767 NA coding protein psRNATarget
HI406918.1
ncRNA:24   CCCA-CAAACUUACGUGAUCUUGAA   1
  ||||-||||||||||||||||=||*
targets:4   GGGUUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 5043 from Patent EP2074227 NA coding protein psRNATarget
HI408687.1
ncRNA:24   CC-CACAAACUUACGUGAUCUUGAA   1
  ||-||||||||||||||||||=||*
targets:5   GGAGUGUUUGAAUGCACUAGAGCUA   29

2.5 Sequence 6812 from Patent EP2074227 NA coding protein psRNATarget
LQ240817.1
ncRNA:24   CC-CACAAACUUACGUGAUCUUGAA   1
  ||-||||||||||||||||||=||*
targets:5   GGAGUGUUUGAAUGCACUAGAGCUA   29

2.5 Sequence 6812 from Patent EP2985353 NA coding protein psRNATarget
JB169148.1
ncRNA:24   CC-CACAAACUUACGUGAUCUUGAA   1
  ||-||||||||||||||||||=||*
targets:5   GGAGUGUUUGAAUGCACUAGAGCUA   29

2.5 Sequence 6812 from Patent EP2559767 NA coding protein psRNATarget
EU971318.1
ncRNA:24   CCC--ACAAACUUACGUGAUCUUGAA   1
  |||--|||||||||||||||||=||*
targets:74   GGGCCUGUUUGAAUGCACUAGAGCUA   99

2.5 Zea mays clone 362028 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT069778.1
ncRNA:24   CCC--ACAAACUUACGUGAUCUUGAA   1
  |||--|||||||||||||||||=||*
targets:425   GGGCCUGUUUGAAUGCACUAGAGCUA   450

2.5 Zea mays full-length cDNA clone ZM_BFb0272K01 mRNA, complete cds NA coding protein psRNATarget
EU943068.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|||||||||||||||||*||||*
targets:54   AGGUGUUUGAAUGCACUAUAACUA   77

2.5 Zea mays clone 1558247 mRNA sequence NA coding protein psRNATarget
JB167259.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|*|||||||||||||||||=||*
targets:5   UGAUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 4923 from Patent EP2559767 NA coding protein psRNATarget
HI406798.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|*|||||||||||||||||=||*
targets:5   UGAUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 4923 from Patent EP2074227 NA coding protein psRNATarget
LQ238928.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  *|*|||||||||||||||||=||*
targets:5   UGAUGUUUGAAUGCACUAGAGCUA   28

2.5 Sequence 4923 from Patent EP2985353 NA coding protein psRNATarget
DQ244933.1
ncRNA:24   CCC---ACAAACUUACGUGAUCUUGAA   1
  *||---|||||||||||||||||=||*
targets:641   AGGCCAUGUUUGAAUGCACUAGAGCUA   667

2.5 Zea mays clone 11846 mRNA sequence NA coding protein psRNATarget
XM_020542354.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  **|||||||||||||||||||*|*
targets:4236   UAGUGUUUGAAUGCACUAGAAAUA   4259

2.5 PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658477.2
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  **|||||||||||||||||||*|*
targets:4236   UAGUGUUUGAAUGCACUAGAAAUA   4259

2.5 PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA NA coding protein psRNATarget
AF305892.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ***|*||||||||||||||||||*
targets:1924   CAAUAUUUGAAUGCACUAGAACUA   1947

1.0 Zea mays microtubule-binding protein TANGLED1 mRNA, complete cds NA coding protein psRNATarget
AY111966.1
ncRNA:24   CCCACAAACUUACGUGAUCUUGAA   1
  ****||||||||||||||*||||*
targets:52   NNNCGUUUGAAUGCACUAUAACUA   75

2.5 Zea mays CL4954_1 mRNA sequence NA coding protein psRNATarget
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