ncRNA ID | osa-miR5492 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:16973816-16973988 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - AGAAGGAGAAUAGAUAUGGUU - 31 |
Stem-loop(if miRNA) |
ACAAUG    A  -       UA    -UG        ---        ---------A      UCUGGUGAUUGGAUUUAAUCAGUGUCU       AGGG GA AGGAGAA  GAUA   GUUGAGUU   AAUUAUAG          AAUCAU                           U       |||| || |||||||  ||||   ||||||||   ||||||||          ||||||                           C       UCCC CU UCCUCUU  UUGU   UAACUCAG   UUGGUGUU          UUUUUC                           U UACUUA    A  C       UG    CAA        AUU        AAUAAUCUUU      ACAUUGAAAAUAAUCAACGUGAAGGGU |
Stem-loop sequence | ACAAUGAGGGAGAAGGAGAAUAGAUAUGGUUGAGUUAAUUAUAGAAAUCAUUCUGGUGAUUGGAUUUAAUCAGUGUCUUCUUGGGAAGUGCAACUAAUAAAAGUUACACUUUUUUUUCUAAUAAUUGUGGUUUUAGACUCAAUAACUGUUGUUUCUCCUCUCACCCUAUUCAU |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |