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BaseInfo

ncRNA ID osa-miR5492
Species Oryza sativa
Class miRNA
Genome position Chr6:16973816-16973988 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - AGAAGGAGAAUAGAUAUGGUU - 31
Stem-loop(if miRNA) ACAAUG    A  -       UA    -UG        ---        ---------A      UCUGGUGAUUGGAUUUAAUCAGUGUCU
      AGGG GA AGGAGAA  GAUA   GUUGAGUU   AAUUAUAG          AAUCAU                           U
      |||| || |||||||  ||||   ||||||||   ||||||||          ||||||                           C
      UCCC CU UCCUCUU  UUGU   UAACUCAG   UUGGUGUU          UUUUUC                           U
UACUUA    A  C       UG    CAA        AUU        AAUAAUCUUU      ACAUUGAAAAUAAUCAACGUGAAGGGU
Stem-loop sequence ACAAUGAGGGAGAAGGAGAAUAGAUAUGGUUGAGUUAAUUAUAGAAAUCAUUCUGGUGAUUGGAUUUAAUCAGUGUCUUCUUGGGAAGUGCAACUAAUAAAAGUUACACUUUUUUUUCUAAUAAUUGUGGUUUUAGACUCAAUAACUGUUGUUUCUCCUCUCACCCUAUUCAU

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).