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BaseInfo

ncRNA ID novel_zma_miR2054
Species Zea mays
Class miRNA
Genome position Chr1:53777200-53777334 [+]
Reference genome RefGen_v4
Source SRR2089711;SRR2089712;SRR2089714;SRR2287031;SRR2287164;SRR1997865;SRR5451005;SRR5451006;SRR1997866;SRR2089698
Length 24
Mature sequence(if miRNA) 112 - AGAGACGUUAGAUUUAAAAUGAGU - 135
Stem-loop(if miRNA) --    C          UA         G   AU        AC   U      UU  ACCACUACAC
  UCAU UUAGAUCUGA  UCUUUGAUU CUU  UAUAUUUU  AAA AACAUC  UC          U
  |||| ||||||||||  ||||||||| |||  ||||||||  ||| ||||||  ||
  AGUA AAUUUAGAUU  AGAGACUAA GAG  AUAUAAAA  UUU UUGUGG  AG          C
UG    A          GC         A   AU        CA   C      -U  ACUUCACCAC
Stem-loop sequence UCAUCUUAGAUCUGAUAUCUUUGAUUGCUUAUUAUAUUUUACAAAUAACAUCUUUCACCACUACACUCCACCACUUCAGAUGGUGUUCUUUACAAAAUAUAUAGAGAAAUCAGAGACGUUAGAUUUAAAAUGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087210.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:342   ACUCAUUUUAGAUCUAACGUCUCU   365

1.0 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
LQ235327.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||||||||||||||||
targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39

0.0 Sequence 1322 from Patent EP2985353 NA coding protein psRNATarget
JB163658.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||||||||||||||||
targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39

0.0 Sequence 1322 from Patent EP2559767 NA coding protein psRNATarget
JB163844.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
HI403197.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||||||||||||||||
targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39

0.0 Sequence 1322 from Patent EP2074227 NA coding protein psRNATarget
HI403383.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
LQ235513.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
HI403224.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
JB163685.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
LQ235354.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||||
targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39

1.0 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
XM_008679080.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||=|
targets:2027   ACUCAUUUUAGAUCUAACGUCUUU   2050

2.5 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679083.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||=|
targets:2018   ACUCAUUUUAGAUCUAACGUCUUU   2041

2.5 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
BT018927.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||=|
targets:1050   ACUCAUUUUAGAUCUAACGUCUUU   1073

2.5 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
BT087938.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||=|
targets:870   ACUCAUUUUAGAUCUAACGUCUUU   893

2.5 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT037068.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||||=|
targets:905   ACUCAUUUUAGAUCUAACGUCUUU   928

2.5 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
LQ241673.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||=|||
targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43

2.5 Sequence 7668 from Patent EP2985353 NA coding protein psRNATarget
JB170004.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||=|||
targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43

2.5 Sequence 7668 from Patent EP2559767 NA coding protein psRNATarget
HI409543.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||||=|||
targets:20   ACUCAUUUUAGAUCUAACGUUUCU   43

2.5 Sequence 7668 from Patent EP2074227 NA coding protein psRNATarget
LQ235514.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=||||||=||||||
targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39

2.5 Sequence 1509 from Patent EP2985353 NA coding protein psRNATarget
HI403384.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=||||||=||||||
targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39

2.5 Sequence 1509 from Patent EP2074227 NA coding protein psRNATarget
JB163845.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=||||||=||||||
targets:16   ACUCAUUUUAGAUCUAAUGUCUCU   39

2.5 Sequence 1509 from Patent EP2559767 NA coding protein psRNATarget
XM_008646350.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||||||||||||*|||
targets:1611   ACUCAUUUUAAAUCUAACGUAUCU   1634

1.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
JB163459.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||=||=||||||||||
targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91

2.5 Sequence 1123 from Patent EP2559767 NA coding protein psRNATarget
HI402998.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||=||=||||||||||
targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91

2.5 Sequence 1123 from Patent EP2074227 NA coding protein psRNATarget
LQ235128.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||=||=||||||||||
targets:68   ACUUAUUUUAGAUUUAACGUCUCU   91

2.5 Sequence 1123 from Patent EP2985353 NA coding protein psRNATarget
LQ235412.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  =|||||||||=|||||||||||=|
targets:20   GCUCAUUUUAGAUCUAACGUCUUU   43

2.5 Sequence 1407 from Patent EP2985353 NA coding protein psRNATarget
HI403282.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  =|||||||||=|||||||||||=|
targets:20   GCUCAUUUUAGAUCUAACGUCUUU   43

2.5 Sequence 1407 from Patent EP2074227 NA coding protein psRNATarget
JB163743.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  =|||||||||=|||||||||||=|
targets:20   GCUCAUUUUAGAUCUAACGUCUUU   43

2.5 Sequence 1407 from Patent EP2559767 NA coding protein psRNATarget
JB163879.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||||||||||||||**
targets:27   ACUCAUUUUAAAUCUAACGUCUAA   50

2.5 Sequence 1543 from Patent EP2559767 NA coding protein psRNATarget
LQ235548.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||||||||||||||**
targets:27   ACUCAUUUUAAAUCUAACGUCUAA   50

2.5 Sequence 1543 from Patent EP2985353 NA coding protein psRNATarget
HI403418.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||||||||||||||**
targets:27   ACUCAUUUUAAAUCUAACGUCUAA   50

2.5 Sequence 1543 from Patent EP2074227 NA coding protein psRNATarget
XM_008654898.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  ||||||||||=|||||||*|||||
targets:5   ACUCAUUUUAGAUCUAACAUCUCU   28

2.5 PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA NA coding protein psRNATarget
BT061436.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |=|=||||||=||=||||||||||
targets:176   AUUUAUUUUAGAUUUAACGUCUCU   199

2.5 Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds NA coding protein psRNATarget
HI405990.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |=|=||||||=||=||||||||||
targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57

2.5 Sequence 4115 from Patent EP2074227 NA coding protein psRNATarget
LQ238120.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |=|=||||||=||=||||||||||
targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57

2.5 Sequence 4115 from Patent EP2985353 NA coding protein psRNATarget
JB166451.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |=|=||||||=||=||||||||||
targets:34   AUUUAUUUUAGAUUUAACGUCUCU   57

2.5 Sequence 4115 from Patent EP2559767 NA coding protein psRNATarget
XM_008664116.2
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||*|||=|||||||||||||
targets:680   ACUUAUCUUAGAUCUAACGUCUCU   703

2.0 PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA NA coding protein psRNATarget
EU948462.1
ncRNA:24   UGAGUAAAAUUUAGAUUGCAGAGA   1
  |||=||||||=|||||||||||*|
targets:439   ACUUAUUUUAGAUCUAACGUCUAU   462

2.5 Zea mays clone 377988 mRNA sequence NA coding protein psRNATarget
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