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BaseInfo

ncRNA ID	osa-miR5828
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:16015691-16015801 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UUACGGCAUUAAAAGUAAAUC - 31
Stem-loop(if miRNA)	A                  U    -AAA  UAAG AAGUAACUUGUUACGGCAUUA AAGUAAAUCUAUUGUGGG UUAG    CA    U ||||||||||||||||||||| |||||||||||||||||| ||||    || UUCAUUGAACAGUGUUGUAAU UUCAUUUAGGUAACACCC AAUU    GU    C                      C                  C    AAAG  UUAU
Stem-loop sequence	AAGUAACUUGUUACGGCAUUAAAAGUAAAUCUAUUGUGGGUUUAGAAACAUAAGUCUAUUUGGAAAUUAACCCCACAAUGGAUUUACUUCUAAUGUUGUGACAAGUUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236691.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:10   GAUUUACUUUUAAUGUCGUAA   30 Target Full Sequence	1.5	Sequence 2686 from Patent EP2985353	NA	coding protein	psRNATarget
HI404561.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:10   GAUUUACUUUUAAUGUCGUAA   30 Target Full Sequence	1.5	Sequence 2686 from Patent EP2074227	NA	coding protein	psRNATarget
JB165022.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:10   GAUUUACUUUUAAUGUCGUAA   30 Target Full Sequence	1.5	Sequence 2686 from Patent EP2559767	NA	coding protein	psRNATarget
HI404267.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:139   GAUUUACUUUUAAUGUCGUAA   159 Target Full Sequence	1.5	Sequence 2392 from Patent EP2074227	NA	coding protein	psRNATarget
JB164728.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:139   GAUUUACUUUUAAUGUCGUAA   159 Target Full Sequence	1.5	Sequence 2392 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236397.1	ncRNA:21   CUAAAUGAAAAUUACGGCAUU   1   |||||||||||||||=||||| targets:139   GAUUUACUUUUAAUGUCGUAA   159 Target Full Sequence	1.5	Sequence 2392 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).