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BaseInfo

ncRNA ID	novel_zma_miR2049
Species	Zea mays
Class	miRNA
Genome position	Chr1:69368006-69368116 [-]
Reference genome	RefGen_v4
Source	SRR2089711
Length	21
Mature sequence(if miRNA)	1 - AAGUGGAAUAAAUUGGAUGGA - 21
Stem-loop(if miRNA)	-  -    U                 UA       CA              UAAC  CC UCUA UUUAUUCUACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA    U  || |||| |||||||||||||||||  |||||||  ||||||||||||||    C  GG AGGU AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACCUUUGAU    U A  U    U                 UG       AG              UUUA
Stem-loop sequence	CCUCUAUUUUAUUCUACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUCCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUGGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549268.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |==|||||||||||||||||| targets:1144   UUUAUCCAAUUUAUUCCACUU   1164 Target Full Sequence	1.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||||||||||||||| targets:1661   UCCCUCCAAUUUAUUCCACUU   1681 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||||||||||||||| targets:22   UCCCUCCAAUUUAUUCCACUU   42 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||||||||||||=|| targets:145   UCCCUCCAAUUUAUUCCAUUU   165 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||*|||||||||||| targets:2991   UCCCUCCAUUUUAUUCCACUU   3011 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||*|||||||||||| targets:2602   UCCCUCCAUUUUAUUCCACUU   2622 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*||||*|||||||||||| targets:484   UCCCUCCAUUUUAUUCCACUU   504 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB167254.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*|||*||||||||||||| targets:11   UCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2559767	NA	coding protein	psRNATarget
HI406793.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*|||*||||||||||||| targets:11   UCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238923.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   |||*|||*||||||||||||| targets:11   UCCCUCCCAUUUAUUCCACUU   31 Target Full Sequence	2.0	Sequence 4918 from Patent EP2985353	NA	coding protein	psRNATarget
AY111571.1	ncRNA:21   AGGUAGGUUAAAUAAGGUGAA   1   *==||*||||||||||||||| targets:901   AUUAUACAAUUUAUUCCACUU   921 Target Full Sequence	2.0	Zea mays CL5790_1 mRNA sequence	NA	coding protein	psRNATarget