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BaseInfo

ncRNA ID	novel_zma_miR2046
Species	Zea mays
Class	miRNA
Genome position	Chr10:124927122-124927253 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089714
Length	24
Mature sequence(if miRNA)	1 - AAGGCUUGUUUGGUUUGUGGCUAA - 24
Stem-loop(if miRNA)	--AA         G      -        AUA          C   AGA  AGUCAUUCAAAUUGAAU     GGCUUGUUU GUUUGU GGCUAACU   UCACACUUUG CUA   UU                 A     ||||||||| |||||| ||||||||   |||||||||| |||   ||                 A     CCGAACAAA CAAGCA CUGAUUGA   AGUGUGAAAC GAU   UG                 C AAUC         A      A        -AC          U   ---  AAAAGACAAAUUACAAU
Stem-loop sequence	AAGGCUUGUUUGGUUUGUGGCUAACUAUAUCACACUUUGCCUAAGAUUAGUCAUUCAAAUUGAAUAACUAACAUUAAACAGAAAAGUUAGUCAAAGUGUGACAAGUUAGUCAACGAACAAAACAAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163829.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=||||||||||||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=||||||||||||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=||||||||||||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||||||||||||=||||| targets:943   UUAGCCACAAACCAAACAGGCCUU   966 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=||||||||||||||| targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044 Target Full Sequence	1.0	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=||||||||||||||| targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044 Target Full Sequence	1.0	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||||||||||||=||||| targets:1427   UUAGCCACAAACCAAACAGGCCUU   1450 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||=||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||=||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||=||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGG-AA   1   ||||||||||||||||||||||-|| targets:2662   UUAGCCACAAACCAAACAAGCCCUU   2686 Target Full Sequence	3.0	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||||||||||||*||||| targets:1410   UUAGCCACAAACCAAACAUGCCUU   1433 Target Full Sequence	1.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||||||*| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	2.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||||||*| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	2.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   ||||||||=|||||||||||||*| targets:109   UUAGCCACGAACCAAACAAGCCCU   132 Target Full Sequence	2.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539533.1	ncRNA:24   AAUCGGUGUUUGGUUUGUUCGGAA   1   *|=|*|||*||||||||||||=|| targets:1284   CUGGGCACUAACCAAACAAGCUUU   1307 Target Full Sequence	2.5	PREDICTED: Zea mays probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (LOC103630250), transcript variant X1, mRNA	NA	coding protein	psRNATarget