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BaseInfo

ncRNA ID	novel_zma_miR2042
Species	Zea mays
Class	miRNA
Genome position	Chr1:115278322-115278377 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089715;SRR2089706
Length	24
Mature sequence(if miRNA)	33 - UCUGAUAUCUGUAUUAUGAGGGGG - 56
Stem-loop(if miRNA)	--   G      G   U        G G   UCU AUAUCU UAU AUGAGGGG U U   ||| |||||| ||| |||||||| | A   AGA UGUAGA AUA UAUUCCUU G C CC   G      G   -        G A
Stem-loop sequence	UCUGAUAUCUGUAUUAUGAGGGGGUGUACAGGUUCCUUAUAUAGAGAUGUGAGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001346555.1	ncRNA:24   GGGGGAGUAUUAUGUCUAUAGUCU   1   |||||||||||||||||*|||||| targets:2049   CCCCCUCAUAAUACAGAGAUCAGA   2072 Target Full Sequence	1.5	Zea mays pectinesterase (LOC103637955), mRNA	NA	coding protein	psRNATarget
BT066231.1	ncRNA:24   GGGGGAGUAUUAUGUCUAUAGUCU   1   |||||||||||||||||*|||||| targets:857   CCCCCUCAUAAUACAGAGAUCAGA   880 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0110N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681307.2	ncRNA:24   GGGGGAGUAUUAUGUCUAUAGUCU   1   ||*|*||||||||||||*|||||| targets:3650   CCACGUCAUAAUACAGAGAUCAGA   3673 Target Full Sequence	1.5	PREDICTED: Zea mays calcium-transporting ATPase 1, plasma membrane-type (LOC103654477), mRNA	NA	coding protein	psRNATarget