Search result

BaseInfo

ncRNA ID novel_zma_miR2039
Species Zea mays
Class miRNA
Genome position Chr1:139328886-139328982 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089715
Length 22
Mature sequence(if miRNA) 76 - UGUGAGGCAUUAUGUGUAGAAA - 97
Stem-loop(if miRNA) --                      A        U C    -U    - U
  UGUGAGGCAUUAUGUGUAGAAA CUAAGAGA C ACAU  GAAA C C
  |||||||||||||||||||||| |||||||| | ||||  |||| | U
  ACACUCUGUGAUACACAUCUUU GAUUCUUU G UGUG  CUUU G A
CA                      G        U A    UU    A U
Stem-loop sequence UGUGAGGCAUUAUGUGUAGAAAACUAAGAGAUCCACAUUGAAACUCUAUGAUUUCUUGUGUAGUUUUCUUAGGUUUCUACACAUAGUGUCUCACAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163698.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1362 from Patent EP2559767 NA coding protein psRNATarget
JB163713.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1377 from Patent EP2559767 NA coding protein psRNATarget
JB163664.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1328 from Patent EP2559767 NA coding protein psRNATarget
HI403226.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1351 from Patent EP2074227 NA coding protein psRNATarget
JB163687.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1351 from Patent EP2559767 NA coding protein psRNATarget
LQ235382.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1377 from Patent EP2985353 NA coding protein psRNATarget
HI403252.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1377 from Patent EP2074227 NA coding protein psRNATarget
HI403203.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1328 from Patent EP2074227 NA coding protein psRNATarget
LQ235356.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1351 from Patent EP2985353 NA coding protein psRNATarget
LQ235333.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1328 from Patent EP2985353 NA coding protein psRNATarget
HI403237.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1362 from Patent EP2074227 NA coding protein psRNATarget
LQ235367.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:79   UUUCUACACAUAAUGUCUCACA   100

1.5 Sequence 1362 from Patent EP2985353 NA coding protein psRNATarget
JB163663.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:77   UUUCUACACAUAAUGUCUCACA   98

1.5 Sequence 1327 from Patent EP2559767 NA coding protein psRNATarget
HI403202.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:77   UUUCUACACAUAAUGUCUCACA   98

1.5 Sequence 1327 from Patent EP2074227 NA coding protein psRNATarget
LQ235332.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||||||||||||||=||||||
targets:77   UUUCUACACAUAAUGUCUCACA   98

1.5 Sequence 1327 from Patent EP2985353 NA coding protein psRNATarget
LQ235330.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  ||||||||=||||||=||||||
targets:79   UUUCUACAUAUAAUGUCUCACA   100

2.5 Sequence 1325 from Patent EP2985353 NA coding protein psRNATarget
JB163661.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  ||||||||=||||||=||||||
targets:79   UUUCUACAUAUAAUGUCUCACA   100

2.5 Sequence 1325 from Patent EP2559767 NA coding protein psRNATarget
LQ235373.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||=|||||||||||=||||||
targets:79   UUUUUACACAUAAUGUCUCACA   100

2.5 Sequence 1368 from Patent EP2985353 NA coding protein psRNATarget
JB163704.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||=|||||||||||=||||||
targets:79   UUUUUACACAUAAUGUCUCACA   100

2.5 Sequence 1368 from Patent EP2559767 NA coding protein psRNATarget
HI403243.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||=|||||||||||=||||||
targets:79   UUUUUACACAUAAUGUCUCACA   100

2.5 Sequence 1368 from Patent EP2074227 NA coding protein psRNATarget
HI403200.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  ||||||||=||||||=||||||
targets:79   UUUCUACAUAUAAUGUCUCACA   100

2.5 Sequence 1325 from Patent EP2074227 NA coding protein psRNATarget
HI403232.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||*|||||||||||=||||||
targets:79   UUUGUACACAUAAUGUCUCACA   100

2.5 Sequence 1357 from Patent EP2074227 NA coding protein psRNATarget
LQ235362.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||*|||||||||||=||||||
targets:79   UUUGUACACAUAAUGUCUCACA   100

2.5 Sequence 1357 from Patent EP2985353 NA coding protein psRNATarget
JB163693.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  |||*|||||||||||=||||||
targets:79   UUUGUACACAUAAUGUCUCACA   100

2.5 Sequence 1357 from Patent EP2559767 NA coding protein psRNATarget
XM_008657268.2
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  *|||*||||||=||||||||||
targets:1934   GUUCCACACAUGAUGCCUCACA   1955

2.5 PREDICTED: Zea mays probable splicing factor 3A subunit 1 (LOC103634672), transcript variant X1, mRNA NA coding protein psRNATarget
EU951030.1
ncRNA:22   AAAGAUGUGUAUUACGGAGUGU   1
  *|||*||||||=||||||||||
targets:38   GUUCCACACAUGAUGCCUCACA   59

2.5 Zea mays clone 679619 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.