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BaseInfo

ncRNA ID	novel_zma_miR2036
Species	Zea mays
Class	miRNA
Genome position	Chr4:10721157-10721213 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - GAUUUCUAUUUUCCCAAGGAAAAU - 24
Stem-loop(if miRNA)	-  U    -       -C         UA  GA UUCU AUUUUCC  AAGGAAAAU  A  || |||| |||||||  |||||||||  CU AAGA UAAAAGG  UUCCUUUUA  U U  U    G       AU         CU
Stem-loop sequence	GAUUUCUAUUUUCCCAAGGAAAAUUAAUUCAUUUUCCUUUAGGAAAAUGAGAAUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541969.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||||||||||||||||||||| targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828 Target Full Sequence	0.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||*||||||||||||||||||| targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770 Target Full Sequence	0.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_020550095.1	ncRNA:24   UAAAA-GGAACCCUUUUAUCUUUAG   1   |||||-|=||||||||||||||||| targets:224   AUUUUACUUUGGGAAAAUAGAAAUC   248 Target Full Sequence	3.0	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545615.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020545618.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020545620.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020545606.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545616.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020545619.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020545607.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545609.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545617.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020545608.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545610.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=|*||||||||||||||| targets:433   AUUUUCUUAGGGAAAAUAGAAAUC   456 Target Full Sequence	2.0	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001153204.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   |||||=|||*|||||||||||||| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.0	Zea mays Omega-amidase chloroplastic (LOC100280276), mRNA	NA	coding protein	psRNATarget
BT055900.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   |||||=|||*|||||||||||||| targets:1398   AUUUUUCUUAGGAAAAUAGAAAUC   1421 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0026G06 mRNA, complete cds	NA	coding protein	psRNATarget
BT085017.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   |||||=|||||*|||||||||||| targets:1515   AUUUUUCUUGGAAAAAUAGAAAUC   1538 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0227H04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674763.2	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1300   AUUUUCUCUUGAGAAAAUAGAAAUC   1324 Target Full Sequence	3.0	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064672.1	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1311   AUUUUCUCUUGAGAAAAUAGAAAUC   1335 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008O01 mRNA, complete cds	NA	coding protein	psRNATarget
EU970039.1	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1205   AUUUUCUCUUGAGAAAAUAGAAAUC   1229 Target Full Sequence	3.0	Zea mays clone 338909 stress regulated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157788.2	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1204   AUUUUCUCUUGAGAAAAUAGAAAUC   1228 Target Full Sequence	3.0	Zea mays stress regulated protein (LOC100284893), mRNA	NA	coding protein	psRNATarget
BT037070.1	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1192   AUUUUCUCUUGAGAAAAUAGAAAUC   1216 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0153L10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674764.2	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1110   AUUUUCUCUUGAGAAAAUAGAAAUC   1134 Target Full Sequence	3.0	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT065169.1	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:1107   AUUUUCUCUUGAGAAAAUAGAAAUC   1131 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0015J15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ112868.1	ncRNA:24   UAAAAG-GAACCCUUUUAUCUUUAG   1   ||||||-||||*||||||||||||| targets:117   AUUUUCUCUUGAGAAAAUAGAAAUC   141 Target Full Sequence	3.0	TSA: Zea mays contig48529, mRNA sequence	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||||||||||*||||| targets:2389   UUUUUUCUUGGGAAAAUAUAAAUC   2412 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||||||||||*||||| targets:2371   UUUUUUCUUGGGAAAAUAUAAAUC   2394 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658779.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *|||||=|||*||||||||||||| targets:1913   UUUUUCUUUGAGAAAAUAGAAAUC   1936 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
NM_001151130.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||*||||||||||||| targets:1609   UUUUUUCUUGAGAAAAUAGAAAUC   1632 Target Full Sequence	2.0	Zea mays uncharacterized LOC100277618 (LOC100277618), mRNA	NA	coding protein	psRNATarget
EU969579.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||*||||||||||||| targets:1609   UUUUUUCUUGAGAAAAUAGAAAUC   1632 Target Full Sequence	2.0	Zea mays clone 332632 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143008.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||*||||||||||||| targets:1198   UUUUUUCUUGAGAAAAUAGAAAUC   1221 Target Full Sequence	2.0	Zea mays Calmodulin-like protein 2 (LOC100216594), mRNA	NA	coding protein	psRNATarget
BT037017.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=||||*||||||||||||| targets:1198   UUUUUUCUUGAGAAAAUAGAAAUC   1221 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0151L07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||*|||||||||||||*||||| targets:972   AUUUCCCUUGGGAAAAUAAAAAUC   995 Target Full Sequence	1.5	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||*|||||||||||||*||||| targets:125   AUUUCCCUUGGGAAAAUAAAAAUC   148 Target Full Sequence	1.5	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
XM_008652877.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   =|||||||||*|||||||*||||| targets:2360   GUUUUCCUUGAGAAAAUAAAAAUC   2383 Target Full Sequence	2.5	PREDICTED: Zea mays D-2-hydroxyglutarate dehydrogenase mitochondrial (si618066c08), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154209.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=||**||||||||||||| targets:800   AUUUUCUUUAAGAAAAUAGAAAUC   823 Target Full Sequence	3.0	Zea mays phospholipid hydroperoxide glutathione peroxidase (LOC100281291), mRNA	NA	coding protein	psRNATarget
EU956246.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   ||||||=||**||||||||||||| targets:800   AUUUUCUUUAAGAAAAUAGAAAUC   823 Target Full Sequence	3.0	Zea mays clone 1559557 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646834.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||||*|*|||||||||||||| targets:4167   UUUUUCCAUAGGAAAAUAGAAAUC   4190 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103626423), mRNA	NA	coding protein	psRNATarget
XM_008669712.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||||*||*||||||||||||| targets:2167   UUUUUCCAUGAGAAAAUAGAAAUC   2190 Target Full Sequence	2.0	PREDICTED: Zea mays DHHC zinc finger domain containing protein (LOC100281605), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957224.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||||*||*||||||||||||| targets:1938   UUUUUCCAUGAGAAAAUAGAAAUC   1961 Target Full Sequence	2.0	Zea mays clone 1586117 DHHC zinc finger domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154524.1	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||||*||*||||||||||||| targets:1938   UUUUUCCAUGAGAAAAUAGAAAUC   1961 Target Full Sequence	2.0	Zea mays DHHC zinc finger domain containing protein (LOC100281605), mRNA	NA	coding protein	psRNATarget
XM_008656202.2	ncRNA:24   UAAAAGGAACCCUUUUAUCUUUAG   1   *||||=|||**||||||||||||| targets:1518   UUUUUUCUUAAGAAAAUAGAAAUC   1541 Target Full Sequence	3.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL7 (LOC103634484), mRNA	NA	coding protein	psRNATarget