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BaseInfo

ncRNA ID	novel_zma_miR2035
Species	Zea mays
Class	miRNA
Genome position	Chr1:185049154-185049336 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089707
Length	24
Mature sequence(if miRNA)	160 - GUGUUUGGUUGGAUGUACAUGGUG - 183
Stem-loop(if miRNA)	--          G  U  A  U           -A  A  C   -      UU  AUAGUG    -   GAGAGUCACGUAAAGAUGAGGUAAA   GUGUUUGGUU GA GU CA GGUGGGAUGGG  GG GG GGC CACUGU  CU      UUUG GAU                         C   |||||||||| || || || |||||||||||  || || ||| ||||||  ||      |||| |||                         A   CACAAACCAA CU CA GU UCACCCUACCC  CC CC CCG GUGGCA  GG      AAAC CUA                         C UA          A  C  -  U           CG  -  -   U      GG  AACUAA    C   GUGCGGCGGUGGUUUUUGAUGAGGU
Stem-loop sequence	GUGUUUGGUUGGAUGUACAUGGUGGGAUGGGAGGAGGCGGCCACUGUUUCUAUAGUGUUUGGAUGAGAGUCACGUAAAGAUGAGGUAAACACUGGAGUAGUUUUUGGUGGCGGCGUGAUCCCAAAAAUCAAGGGGACGGUGUGCCCCCCGCCCCAUCCCACUUUGACCUCAAACCAAACACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ075878.1	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   ==|==|||=||||||||||||||* targets:138   UGCUGUGUGCAUCCAACCAAACAG   161 Target Full Sequence	2.0	TSA: Zea mays contig11515, mRNA sequence	NA	coding protein	psRNATarget
NM_001151949.1	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   |*||||*||||||||||||||=|| targets:1858   CUCCAUUUACAUCCAACCAAAUAC   1881 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100278785), mRNA	NA	coding protein	psRNATarget
EU975095.1	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   |*||||*||||||||||||||=|| targets:1858   CUCCAUUUACAUCCAACCAAAUAC   1881 Target Full Sequence	2.5	Zea mays clone 468769 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061001.1	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   |*||||*||||||||||||||=|| targets:2044   CUCCAUUUACAUCCAACCAAAUAC   2067 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0083N14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548181.1	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   |*||*||||||||||||=|||||| targets:2071   CUCCUUGUACAUCCAACUAAACAC   2094 Target Full Sequence	1.5	PREDICTED: Zea mays proline--tRNA ligase, cytoplasmic-like (LOC103648437), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT084785.2	ncRNA:24   GUGGUACAUGUAGGUUGGUUUGUG   1   =||=-|*||||||||||||||||| targets:455   UACU-UAUACAUCCAACCAAACAC   477 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0180O09 mRNA, complete cds	NA	coding protein	psRNATarget