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BaseInfo

ncRNA ID novel_zma_miR2033
Species Zea mays
Class miRNA
Genome position Chr1:194141561-194141652 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089713;SRR2089715;SRR1997866;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 69 - UGGAUUGAGUGGGAUUGGAUGGGA - 92
Stem-loop(if miRNA) --   A    GU         U      A         C   A  A
  UGG UUGA  GGGAUUGGA GGGAUU AAUCCCCUC UAU CA A
  ||| ||||  ||||||||| |||||| ||||||||| ||| ||
  ACC AACU  CCCUAACCU CCCUAA UUAGGGGAG AUA GU U
CC   A    AC         C      A         A   A  U
Stem-loop sequence UGGAUUGAGUGGGAUUGGAUGGGAUUAAAUCCCCUCCUAUACAAAUUUGAAUAAGAGGGGAUUAAAUCCCCUCCAAUCCCCAUCAAACCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166350.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCA   99

0.0 Sequence 4014 from Patent EP2559767 NA coding protein psRNATarget
HI405889.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCA   99

0.0 Sequence 4014 from Patent EP2074227 NA coding protein psRNATarget
LQ238019.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:76   ACCCAUCCAAUCCCACUCAAUCCA   99

0.0 Sequence 4014 from Patent EP2985353 NA coding protein psRNATarget
HI405841.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCA   109

0.0 Sequence 3966 from Patent EP2074227 NA coding protein psRNATarget
JB166302.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCA   109

0.0 Sequence 3966 from Patent EP2559767 NA coding protein psRNATarget
LQ237971.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:86   ACCCAUCCAAUCCCACUCAAUCCA   109

0.0 Sequence 3966 from Patent EP2985353 NA coding protein psRNATarget
LQ235135.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
LQ235224.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1219 from Patent EP2985353 NA coding protein psRNATarget
JB163466.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
JB163555.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1219 from Patent EP2559767 NA coding protein psRNATarget
HI403094.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:95   ACCCAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1219 from Patent EP2074227 NA coding protein psRNATarget
EU951448.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:742   ACCCAUCCAAUCCCACUCAAUCCA   765

0.0 Zea mays clone 701961 mRNA sequence NA coding protein psRNATarget
XM_020552889.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:871   ACCCAUCCAAUCCCACUCAAUCCA   894

0.0 PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA NA coding protein psRNATarget
BT085319.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:173   ACCCAUCCAAUCCCACUCAAUCCA   196

0.0 Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds NA coding protein psRNATarget
BT069115.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:525   ACCCAUCCAAUCCCACUCAAUCCA   548

0.0 Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds NA coding protein psRNATarget
BT043378.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1463   ACCCAUCCAAUCCCACUCAAUCCA   1486

0.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1463   ACCCAUCCAAUCCCACUCAAUCCA   1486

0.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT088232.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1527   ACCCAUCCAAUCCCACUCAAUCCA   1550

0.0 Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds NA coding protein psRNATarget
NM_001279968.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1527   ACCCAUCCAAUCCCACUCAAUCCA   1550

0.0 Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA NA coding protein psRNATarget
EU955633.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1812   ACCCAUCCAAUCCCACUCAAUCCA   1835

0.0 Zea mays clone 1540038 transposon protein mRNA, complete cds NA coding protein psRNATarget
NM_001154031.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1812   ACCCAUCCAAUCCCACUCAAUCCA   1835

0.0 Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA NA coding protein psRNATarget
XM_008679547.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:2497   ACCCAUCCAAUCCCACUCAAUCCA   2520

0.0 PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA NA coding protein psRNATarget
BT066874.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1955   ACCCAUCCAAUCCCACUCAAUCCA   1978

0.0 Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds NA coding protein psRNATarget
NM_001175969.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1955   ACCCAUCCAAUCCCACUCAAUCCA   1978

0.0 Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA NA coding protein psRNATarget
XM_020549843.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1078   ACCCAUCCAAUCCCACUCAAUCCA   1101

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549841.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1196   ACCCAUCCAAUCCCACUCAAUCCA   1219

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549842.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1196   ACCCAUCCAAUCCCACUCAAUCCA   1219

0.0 PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658241.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:1226   ACCCAUCCAAUCCCACUCAAUCCA   1249

0.0 PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545430.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||||||||||
targets:5801   ACCCAUCCAAUCCCACUCAAUCCA   5824

0.0 PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA NA coding protein psRNATarget
JB166354.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:76   ACCCAUCCAAUCUCACUCAAUCCA   99

1.5 Sequence 4018 from Patent EP2559767 NA coding protein psRNATarget
LQ238023.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:76   ACCCAUCCAAUCUCACUCAAUCCA   99

1.5 Sequence 4018 from Patent EP2985353 NA coding protein psRNATarget
HI405893.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:76   ACCCAUCCAAUCUCACUCAAUCCA   99

1.5 Sequence 4018 from Patent EP2074227 NA coding protein psRNATarget
HI405902.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCA   100

0.0 Sequence 4027 from Patent EP2074227 NA coding protein psRNATarget
LQ238032.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCA   100

0.0 Sequence 4027 from Patent EP2985353 NA coding protein psRNATarget
JB166363.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||||||||||
targets:77   ACUCAUCCAAUCCCACUCAAUCCA   100

0.0 Sequence 4027 from Patent EP2559767 NA coding protein psRNATarget
EZ064016.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||||||||||
targets:117   ACUCAUCCAAUCCCACUCAAUCCA   140

0.0 TSA: Zea mays contig65139, mRNA sequence NA coding protein psRNATarget
EU942657.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:232   ACCCAUCCAAUCCUACUCAAUCCA   255

1.5 Zea mays clone 1527578 mRNA sequence NA coding protein psRNATarget
BT086633.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:452   ACCCAUCCAAUCUCACUCAAUCCA   475

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT068797.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:1125   ACCCAUCCAAUCCCGCUCAAUCCA   1148

1.5 Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds NA coding protein psRNATarget
NM_001176594.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:1125   ACCCAUCCAAUCCCGCUCAAUCCA   1148

1.5 Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA NA coding protein psRNATarget
EU949831.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:1010   ACCCAUCCAAUCCUACUCAAUCCA   1033

1.5 Zea mays clone 447574 mRNA sequence NA coding protein psRNATarget
XM_008645912.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:1616   ACCCAUCCAAUCCCGCUCAAUCCA   1639

1.5 PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664276.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:2044   ACCCAUCCAAUCCCGCUCAAUCCA   2067

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA NA coding protein psRNATarget
BT018903.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:2026   ACCCAUCCAAUCCCGCUCAAUCCA   2049

1.5 Zea mays clone EL01T0208C03.d mRNA sequence NA coding protein psRNATarget
XM_008664275.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:2137   ACCCAUCCAAUCCCGCUCAAUCCA   2160

1.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA NA coding protein psRNATarget
BT063416.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2077   ACCCAUCCAAUCUCACUCAAUCCA   2100

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
XM_008661718.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||||||||||
targets:2208   ACUCAUCCAAUCCCACUCAAUCCA   2231

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2149   ACCCAUCCAAUCUCACUCAAUCCA   2172

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2150   ACCCAUCCAAUCUCACUCAAUCCA   2173

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2278   ACCCAUCCAAUCUCACUCAAUCCA   2301

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2285   ACCCAUCCAAUCUCACUCAAUCCA   2308

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||=|||||||||||
targets:2345   ACCCAUCCAAUCUCACUCAAUCCA   2368

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541449.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:2797   ACCCAUCCAAUCCCGCUCAAUCCA   2820

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541448.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||=|||||||||
targets:2901   ACCCAUCCAAUCCCGCUCAAUCCA   2924

1.5 PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666493.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:3477   ACCCAUCCAAUCCUACUCAAUCCA   3500

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546709.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:3463   ACCCAUCCAAUCCUACUCAAUCCA   3486

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008666491.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:3745   ACCCAUCCAAUCCUACUCAAUCCA   3768

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666492.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||||||||=||||||||||
targets:3750   ACCCAUCCAAUCCUACUCAAUCCA   3773

1.5 PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA NA coding protein psRNATarget
EZ092645.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||=|||||||||||
targets:13   ACUCAUCCAAUCUCACUCAAUCCA   36

1.5 TSA: Zea mays contig28294, mRNA sequence NA coding protein psRNATarget
JB166338.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||=|||||||||||
targets:84   ACUCAUCCAAUCUCACUCAAUCCA   107

1.5 Sequence 4002 from Patent EP2559767 NA coding protein psRNATarget
HI405877.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||=|||||||||||
targets:84   ACUCAUCCAAUCUCACUCAAUCCA   107

1.5 Sequence 4002 from Patent EP2074227 NA coding protein psRNATarget
LQ238007.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||=|||||||||||
targets:84   ACUCAUCCAAUCUCACUCAAUCCA   107

1.5 Sequence 4002 from Patent EP2985353 NA coding protein psRNATarget
LQ235150.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118

1.0 Sequence 1145 from Patent EP2985353 NA coding protein psRNATarget
JB163481.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118

1.0 Sequence 1145 from Patent EP2559767 NA coding protein psRNATarget
HI403020.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:95   ACUCAUUCAAUCCCACUCAAUCCA   118

1.0 Sequence 1145 from Patent EP2074227 NA coding protein psRNATarget
HI403019.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:95   ACUCAUCCAAUCCCACUUAAUCCA   118

1.5 Sequence 1144 from Patent EP2074227 NA coding protein psRNATarget
JB163480.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:95   ACUCAUCCAAUCCCACUUAAUCCA   118

1.5 Sequence 1144 from Patent EP2559767 NA coding protein psRNATarget
LQ235149.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:95   ACUCAUCCAAUCCCACUUAAUCCA   118

1.5 Sequence 1144 from Patent EP2985353 NA coding protein psRNATarget
EU942673.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:88   ACUCAUUCAAUCCCACUCAAUCCA   111

1.0 Zea mays clone 1529344 mRNA sequence NA coding protein psRNATarget
BT062183.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||=|||||||||||
targets:243   ACUCAUCCAAUCUCACUCAAUCCA   266

1.5 Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds NA coding protein psRNATarget
NM_001147844.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:1121   ACUCAUUCAAUCCCACUCAAUCCA   1144

1.0 Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA NA coding protein psRNATarget
BT041052.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:1121   ACUCAUUCAAUCCCACUCAAUCCA   1144

1.0 Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds NA coding protein psRNATarget
BT066987.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||=|||||||||||||||||
targets:1412   ACUCAUUCAAUCCCACUCAAUCCA   1435

1.0 Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds NA coding protein psRNATarget
XM_020539703.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||=||||||||||=|||||||||
targets:57   ACCUAUCCAAUCCCGCUCAAUCCA   80

1.5 PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657579.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:7142   ACUCAUCCAAUCCCACUUAAUCCA   7165

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008657578.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:7246   ACUCAUCCAAUCCCACUUAAUCCA   7269

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542399.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||||||||||||=||||||
targets:7257   ACUCAUCCAAUCCCACUUAAUCCA   7280

1.5 PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA NA coding protein psRNATarget
HI409272.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||*|||||||
targets:71   ACCCAUCCAAUCCCACCCAAUCCA   94

1.5 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
LQ241402.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||*|||||||
targets:71   ACCCAUCCAAUCCCACCCAAUCCA   94

1.5 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
JB169733.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||*|||||||
targets:71   ACCCAUCCAAUCCCACCCAAUCCA   94

1.5 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
HI403090.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||*||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1215 from Patent EP2074227 NA coding protein psRNATarget
JB163551.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||*||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1215 from Patent EP2559767 NA coding protein psRNATarget
LQ235220.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||*||||||||||||||||||||
targets:95   ACCAAUCCAAUCCCACUCAAUCCA   118

0.0 Sequence 1215 from Patent EP2985353 NA coding protein psRNATarget
EZ064093.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||*||||||||||||||||||
targets:185   ACCCACCCAAUCCCACUCAAUCCA   208

1.0 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
XM_008678390.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||*|||||||
targets:1808   ACCCAUCCAAUCCCACCCAAUCCA   1831

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008678388.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||||||||||||||*|||||||
targets:1824   ACCCAUCCAAUCCCACCCAAUCCA   1847

1.5 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||=||||=|||||||||||
targets:3391   ACUCAUCUAAUCUCACUCAAUCCA   3414

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||=||||=|||||||||||
targets:3404   ACUCAUCUAAUCUCACUCAAUCCA   3427

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||=||||=|||||||||||
targets:3435   ACUCAUCUAAUCUCACUCAAUCCA   3458

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
BT042044.2
ncRNA:24   AGG----GUAGGUUAGGGUGAGUUAGGU   1
  |=|----||||=||||||||||||||||
targets:1358   UUCAACACAUCUAAUCCCACUCAAUCCA   1385

1.0 Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds NA coding protein psRNATarget
XM_008669549.1
ncRNA:24   AGG----GUAGGUUAGGGUGAGUUAGGU   1
  |=|----||||=||||||||||||||||
targets:2075   UUCAACACAUCUAAUCCCACUCAAUCCA   2102

1.0 PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA NA coding protein psRNATarget
JB169468.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||*||||||||||||||||||
targets:70   ACUCACCCAAUCCCACUCAAUCCA   93

1.0 Sequence 7132 from Patent EP2559767 NA coding protein psRNATarget
HI409007.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||*||||||||||||||||||
targets:70   ACUCACCCAAUCCCACUCAAUCCA   93

1.0 Sequence 7132 from Patent EP2074227 NA coding protein psRNATarget
LQ241137.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||*||||||||||||||||||
targets:70   ACUCACCCAAUCCCACUCAAUCCA   93

1.0 Sequence 7132 from Patent EP2985353 NA coding protein psRNATarget
BT069961.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|*||||||||||||||||||=||
targets:107   ACACAUCCAAUCCCACUCAAUUCA   130

1.5 Zea mays full-length cDNA clone ZM_BFb0347H16 mRNA, complete cds NA coding protein psRNATarget
XM_008659614.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=|||||||||||||*|||||||
targets:182   ACUCAUCCAAUCCCACACAAUCCA   205

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA NA coding protein psRNATarget
XM_020552750.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||||||=||||||*|||||||||
targets:139   ACCCAUCUAAUCCCUCUCAAUCCA   162

2.5 PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA NA coding protein psRNATarget
XM_020553538.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||*||||||||||=|||||||||
targets:1883   ACCAAUCCAAUCCCGCUCAAUCCA   1906

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645867.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||*||||||||||=|||||||||
targets:1949   ACCAAUCCAAUCCCGCUCAAUCCA   1972

1.5 PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552749.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  ||||*|||||||||*|||||||||
targets:3273   UCCCCUCCAAUCCCCCUCAAUCCA   3296

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  ||||*|||||||||*|||||||||
targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  ||||*|||||||||*|||||||||
targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
JB166339.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|*=||||||||=|||||||||||
targets:88   ACAUAUCCAAUCUCACUCAAUCCA   111

1.5 Sequence 4003 from Patent EP2559767 NA coding protein psRNATarget
HI405878.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|*=||||||||=|||||||||||
targets:88   ACAUAUCCAAUCUCACUCAAUCCA   111

1.5 Sequence 4003 from Patent EP2074227 NA coding protein psRNATarget
LQ238008.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|*=||||||||=|||||||||||
targets:88   ACAUAUCCAAUCUCACUCAAUCCA   111

1.5 Sequence 4003 from Patent EP2985353 NA coding protein psRNATarget
EZ052459.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|*|||||=||||=||||||||||
targets:21   ACACAUCCGAUCCUACUCAAUCCA   44

2.5 TSA: Zea mays contig53580, mRNA sequence NA coding protein psRNATarget
XM_008667120.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *||=|||*|||||||||||||=||
targets:945   ACCUAUCAAAUCCCACUCAAUUCA   968

2.5 PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA NA coding protein psRNATarget
BT066441.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|=||||=||||||||*|||||||
targets:1524   ACUCAUCUAAUCCCACCCAAUCCA   1547

2.5 Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds NA coding protein psRNATarget
JB166342.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110

1.5 Sequence 4006 from Patent EP2559767 NA coding protein psRNATarget
LQ238011.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110

1.5 Sequence 4006 from Patent EP2985353 NA coding protein psRNATarget
HI405881.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110

1.5 Sequence 4006 from Patent EP2074227 NA coding protein psRNATarget
JB166294.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111

1.5 Sequence 3958 from Patent EP2559767 NA coding protein psRNATarget
HI405833.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111

1.5 Sequence 3958 from Patent EP2074227 NA coding protein psRNATarget
LQ237963.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111

1.5 Sequence 3958 from Patent EP2985353 NA coding protein psRNATarget
EU944907.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  |===*||||||||||=||||||||
targets:337   UUUUUUCCAAUCCCAUUCAAUCCA   360

1.5 Zea mays clone 235115 mRNA sequence NA coding protein psRNATarget
EZ083462.1
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  ||||*|||||||||*||||||||*
targets:33   UCCCUUCCAAUCCCCCUCAAUCCC   56

2.5 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
BT061531.2
ncRNA:24   AGGGUAGGUUAGGGUGAGUUAGGU   1
  *|||*|=|||||||*|||||||||
targets:843   ACCCCUUCAAUCCCCCUCAAUCCA   866

2.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
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