| ncRNA ID | osa-miR1871 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr6:13330464-13330598 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 82 - AUGGCUCUGAUAUCAUGUUGGUUU - 105 |
| Stem-loop(if miRNA) |
UA - U UG UC U U G GUAGCCAU ACAAUGAA UAUAUC GU UUUC UCAAA CUAACAUGGUAUCGGA CCAUAG U A |||||||| |||||| || |||| ||||| |||||||||||||||| |||||| | U UGUUACUU AUAUAG CA AAAG AGUUU GGUUGUACUAUAGUCU GGUAUC A C -A U U GU GA U C G AAUUCUAA |
| Stem-loop sequence | UAACAAUGAAUAUAUCUGUUGUUUCUCUCAAAUCUAACAUGGUAUCGGAUCCAUAGGUGUAGCCAUAUCAAUCUUAAAGCUAUGGCUCUGAUAUCAUGUUGGUUUUGAAGGAAAUGACUGAUAUAUUUCAUUGUA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015787285.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1-like (LOC107276302), mRNA | very-long-chain 3-oxoacyl-CoA reductase 1-like(LOC107276302) | coding protein | psRNATarget |
| 1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |