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BaseInfo

ncRNA ID novel_zma_miR2025
Species Zea mays
Class miRNA
Genome position Chr1:228157120-228157179 [-]
Reference genome RefGen_v4
Source SRR2089711;SRR2089699;SRR2089702;SRR2089704;SRR2089705;SRR2089706
Length 24
Mature sequence(if miRNA) 1 - UAAAUGCAUUUGUAGCGACGGGCC - 24
Stem-loop(if miRNA) --UUG       A    -   G  C    A
     GUCGCUA AAGU UAU UA CGAC G
     ||||||| |||| ||| || |||| U
     CAGCGAU UUUA GUA AU GCUG U
CCGGG       G    C   A  C    G
Stem-loop sequence UUGGUCGCUAAAAGUUAUGUACCGACAGUUGGUCGCUAAAUGCAUUUGUAGCGACGGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ244513.1
ncRNA:24   CCGGGCAGCGAUGUUUACGUAAAU   1
  *|===||*||*||||||||||||*
targets:264   AGUUUGUGGCGACAAAUGCAUUUC   287

3.0 Zea mays clone 8713 mRNA sequence NA coding protein psRNATarget
EZ060439.1
ncRNA:24   CCGGGCAGCGAUGUUUACGUAAAU   1
  *|==|**|||*|||||||||||||
targets:80   UGUUCAGCGCAACAAAUGCAUUUA   103

3.0 TSA: Zea mays contig61561, mRNA sequence NA coding protein psRNATarget