Search result

BaseInfo

ncRNA ID	novel_zma_miR2021
Species	Zea mays
Class	miRNA
Genome position	Chr10:56218552-56218608 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUUCAUCUCAAUACAUGUGGAUUG - 24
Stem-loop(if miRNA)	--                    --A       AUCUACAUGUAUUGAGAUGA   GAGGU   ||||||||||||||||||||   ||||C   UAGGUGUACAUAACUCUACU   CUCCA GU                    UAG
Stem-loop sequence	AUCUACAUGUAUUGAGAUGAAGAGGUCACCUCGAUUCAUCUCAAUACAUGUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU963259.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||=|||||||||||||=||||| targets:867   CAAUUCACAUGUAUUGAGGUGAAU   890 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
LQ235253.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   *||||||||||||||||||||=|| targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37 Target Full Sequence	1.5	Sequence 1248 from Patent EP2985353	NA	coding protein	psRNATarget
HI403123.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   *||||||||||||||||||||=|| targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37 Target Full Sequence	1.5	Sequence 1248 from Patent EP2074227	NA	coding protein	psRNATarget
JB163584.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   *||||||||||||||||||||=|| targets:14   GAAUCCACAUGUAUUGAGAUGGAU   37 Target Full Sequence	1.5	Sequence 1248 from Patent EP2559767	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||=||=||||||||||=||||| targets:624   CAAUUCAUAUGUAUUGAGGUGAAU   647 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||=||=||||||||||=||||| targets:624   CAAUUCAUAUGUAUUGAGGUGAAU   647 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
AY104367.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||=||=||||||||||=||||| targets:557   CAAUUCAUAUGUAUUGAGGUGAAU   580 Target Full Sequence	2.5	Zea mays PCO134486 mRNA sequence	NA	coding protein	psRNATarget
HI403078.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||*=|||||*|||||||||||| targets:78   CAAUAUACAUGGAUUGAGAUGAAU   101 Target Full Sequence	2.5	Sequence 1203 from Patent EP2074227	NA	coding protein	psRNATarget
JB163539.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||*=|||||*|||||||||||| targets:78   CAAUAUACAUGGAUUGAGAUGAAU   101 Target Full Sequence	2.5	Sequence 1203 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235208.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   ||||*=|||||*|||||||||||| targets:78   CAAUAUACAUGGAUUGAGAUGAAU   101 Target Full Sequence	2.5	Sequence 1203 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   |||*|||||||*|||||||||||* targets:273   CAACCCACAUGGAUUGAGAUGAAA   296 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:24   GUUAGGUGUACAUAACUCUACUUA   1   |||*|||||||*|||||||||||* targets:273   CAACCCACAUGGAUUGAGAUGAAA   296 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget