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BaseInfo

ncRNA ID	novel_zma_miR2012
Species	Zea mays
Class	miRNA
Genome position	Chr1:298102474-298102547 [-]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089708
Length	24
Mature sequence(if miRNA)	51 - GUGGAUUGAAUAAGAUUGAGUCGG - 74
Stem-loop(if miRNA)	--         A          UCG  -UUAAAU  AC   GUGGAUUGA UAAGAUUGAG   GU       CU  A   ||||||||| ||||||||||   ||       ||   CACCUAACU AUUCUAAUUC   CA       GA  A CU         C          -UA  UAAAACU  AU
Stem-loop sequence	GUGGAUUGAAUAAGAUUGAGUCGGUUUAAAUCUACAAUAAGUCAAAAUACAUCUUAAUCUUACUCAAUCCACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654741.2	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ||||||||||**|||||||||||| targets:1875   CCGACUCAAUACUAUUCAAUCCAC   1898 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654742.2	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ||||||||||**|||||||||||| targets:1811   CCGACUCAAUACUAUUCAAUCCAC   1834 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI405883.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ||||||||||**|||||||||||| targets:72   CCGACUCAAUACUAUUCAAUCCAC   95 Target Full Sequence	2.5	Sequence 4008 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238013.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ||||||||||**|||||||||||| targets:72   CCGACUCAAUACUAUUCAAUCCAC   95 Target Full Sequence	2.5	Sequence 4008 from Patent EP2985353	NA	coding protein	psRNATarget
JB166344.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ||||||||||**|||||||||||| targets:72   CCGACUCAAUACUAUUCAAUCCAC   95 Target Full Sequence	2.5	Sequence 4008 from Patent EP2559767	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   |=*|=*||||||*||||||||||| targets:96   CUCAUCCAAUCUCAUUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   |=*|=*||||||*||||||||||| targets:96   CUCAUCCAAUCUCAUUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   |=*|=*||||||*||||||||||| targets:96   CUCAUCCAAUCUCAUUCAAUCCAC   119 Target Full Sequence	2.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
HI403334.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ==**=|||||||*||||||||||= targets:71   UUUUUUCAAUCUCAUUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 1459 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235464.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ==**=|||||||*||||||||||= targets:71   UUUUUUCAAUCUCAUUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 1459 from Patent EP2985353	NA	coding protein	psRNATarget
JB163795.1	ncRNA:24   GGCUGAGUUAGAAUAAGUUAGGUG   1   ==**=|||||||*||||||||||= targets:71   UUUUUUCAAUCUCAUUCAAUCCAU   94 Target Full Sequence	2.5	Sequence 1459 from Patent EP2559767	NA	coding protein	psRNATarget