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BaseInfo

ncRNA ID	osa-miR5799
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:10732163-10732286 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AAGACGAAUAAUCAAACGUUGGAC - 34
Stem-loop(if miRNA)	UU       UAA  CG    A C          CA    CAG  -    ----   G      U   UUUGAAA   GA  AAUA U AAACGUUGGA  UAAA   UG UAAA    AUU UUGUCU U   |||||||   ||  |||| | ||||||||||  ||||   || ||||    ||| |||||| C   AGAUUUU   CU  UUAU A UUUGCAAUUU  AUUU   AC AUUU    UGG GGCAGG U UU       -CA  AU    C A          AG    -UA  U    AUGA   G      A
Stem-loop sequence	UUUUUGAAAUAAGACGAAUAAUCAAACGUUGGACAUAAACAGUGUAAAAUUGUUGUCUUUCUAGGACGGGGGUAGUAUUUAUCAAUUUUAGAUUUAACGUUUAACUAUUUAUCACUUUUAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241663.1	ncRNA:24   CAGGUUGCAAACUAAUAAGCAGAA   1   ||=||||||||||||||||*|||| targets:853   GUUCAACGUUUGAUUAUUCAUCUU   876 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065191L10, full insert sequence	NA	coding protein	psRNATarget
AK069810.1	ncRNA:24   CAGGUUGCAAACUAAUAAGCAGAA   1   ||=||||*||||||*||||||||| targets:2676   GUUCAACUUUUGAUCAUUCGUCUU   2699 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023027G23, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).