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BaseInfo

ncRNA ID	novel_zma_miR2004
Species	Zea mays
Class	miRNA
Genome position	Chr1:302757302-302757450 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287031;SRR2287159;SRR2287163;SRR2287164;SRR5451005;SRR5451006;SRR2089698;SRR2089699;SRR2089701;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGGGGACGCUGCUGGAGACAACCU - 24
Stem-loop(if miRNA)	-A     C      GG      --C   ---AU      AA         AUUCUUAAAU    GU   ACUAUCUUAGUGC   GGGGA GCUGCU  AGACAA   CUA     GUAGUA  GAUUUGUGC          GCAU  GAU             U   ||||| ||||||  ||||||   |||     ||||||  |||||||||          ||||  |||             A   UCCUU UGACGA  UUUGUU   GAU     CAUCGU  UUGAGCACG          GUGU  GGA             A AA     U      GG      ACC   CUCCU      -C         ---------G    --   CGUGUUCACUACA
Stem-loop sequence	AGGGGACGCUGCUGGAGACAACCUAAUGUAGUAAAGAUUUGUGCAUUCUUAAAUGCAUGUGAUACUAUCUUAGUGCUAAACAUCACUUGUGCAGGUGUGGGCACGAGUUCUGCUACUCCUCUAGCCAUUGUUUGGAGCAGUUUUCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020553398.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |||||||||||||||||||||=|| targets:1511   AGGUUGUCUCCAGCAGCGUCCUCU   1534 Target Full Sequence	1.5	PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |||*|||||||||||||||||||| targets:9   AGGCUGUCUCCAGCAGCGUCCCCU   32 Target Full Sequence	0.0	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
EZ107270.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****||||||||||||||||=|| targets:104   UCUCCGUCUCCAGCAGCGUCCUCU   127 Target Full Sequence	1.5	TSA: Zea mays contig42928, mRNA sequence	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |||*|||||||||||||||||||| targets:553   AGGCUGUCUCCAGCAGCGUCCCCU   576 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT067838.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****||||||||||||||||=|| targets:648   UCUCCGUCUCCAGCAGCGUCCUCU   671 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |||*|||||||||||||||||=|| targets:1779   AGGCUGUCUCCAGCAGCGUCCUCU   1802 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649073.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****|||||||||||=||||||| targets:1874   UCUCAGUCUCCAGCAGUGUCCCCU   1897 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |||*|||||||||||||||||=|| targets:1878   AGGCUGUCUCCAGCAGCGUCCUCU   1901 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649072.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****|||||||||||=||||||| targets:1973   UCUCAGUCUCCAGCAGUGUCCCCU   1996 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   |*||||||||=||||||||||=|| targets:3143   AUGUUGUCUCUAGCAGCGUCCUCU   3166 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   ||**|*|||||||||||||||||| targets:2158   AGACUCUCUCCAGCAGCGUCCCCU   2181 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681125.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****|||||||*||||||||||| targets:2253   UCUCAGUCUCCAACAGCGUCCCCU   2276 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT088287.1	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   *****||||||||||||||||=|| targets:581   UCUCCGUCUCCAGCAGCGUCCUCU   604 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673578.2	ncRNA:24   UCCAACAGAGGUCGUCGCAGGGGA   1   ****|||||||||||*|||||||| targets:51   UCUGUGUCUCCAGCAACGUCCCCU   74 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103649274), mRNA	NA	coding protein	psRNATarget