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BaseInfo

ncRNA ID	novel_zma_miR2002
Species	Zea mays
Class	miRNA
Genome position	Chr1:299455004-299455104 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2089712;SRR2089715
Length	21
Mature sequence(if miRNA)	1 - UAGGGCUUGUUCGUUUUGGAG - 21
Stem-loop(if miRNA)	--        -                                    AUUA   UAGGGCUU GUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGG    A   |||||||| ||||||||||||||||||||||||||||||||||||   AUUCCGAA CAAGCAAAACCUCACCUAACUCCCCCUAACCUCCUC    A GA        A                                    CCCU
Stem-loop sequence	UAGGGCUUGUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCCUCCAAUCCCCCUCAAUCCACUCCAAAACGAACAAAGCCUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067853.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ||||||||||||||||||||* targets:2218   CUCCAAAACGAACAAGCCCUU   2238 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget
BT016657.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ||||||=||||||=||||||| targets:466   CUCCAAGACGAACGAGCCCUA   486 Target Full Sequence	2.5	Zea mays clone Contig490 mRNA sequence	NA	coding protein	psRNATarget
XM_008671918.2	ncRNA:20   AGGUUUUGCUUGUUCGGGAU   1   ||||||=||||||||||||| targets:1   UCCAAAGCGAACAAGCCCUA   20 Target Full Sequence	1.0	PREDICTED: Zea mays probable WRKY transcription factor 53 (LOC103647375), mRNA	NA	coding protein	psRNATarget
EU951778.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   |*||||||||||||||||||| targets:478   CACCAAAACGAACAAGCCCUA   498 Target Full Sequence	0.0	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget
BT039068.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   *|||||||||||||||||||* targets:1214   AUCCAAAACGAACAAGCCCUU   1234 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0368C07 mRNA, complete cds	NA	coding protein	psRNATarget
BT042142.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   *|||||||||||||||||||* targets:1355   AUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0145P12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148364.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   *|||||||||||||||||||* targets:1355   AUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays DNA replication licensing factor MCM7 (cl18116_1), mRNA	NA	coding protein	psRNATarget
BT054737.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ||=||||*||||||||||||| targets:215   CUUCAAACCGAACAAGCCCUA   235 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654032.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   **||=|||||||||||||||| targets:1027   AGCCGAAACGAACAAGCCCUA   1047 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   **||=|||||||||||||||| targets:6542   AGCCGAAACGAACAAGCCCUA   6562 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968162.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ||=||||*||||||||||||= targets:254   CUUCAAACCGAACAAGCCCUG   274 Target Full Sequence	3.0	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***|||||||||||||||||| targets:1842   GAGCAAAACGAACAAGCCCUA   1862 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***|||||||||||||||||| targets:1858   GAGCAAAACGAACAAGCCCUA   1878 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406804.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   **||*|||||||||||||||| targets:115   GACCCAAACGAACAAGCCCUA   135 Target Full Sequence	1.0	Sequence 4929 from Patent EP2074227	NA	coding protein	psRNATarget
JB167265.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   **||*|||||||||||||||| targets:115   GACCCAAACGAACAAGCCCUA   135 Target Full Sequence	1.0	Sequence 4929 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238934.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   **||*|||||||||||||||| targets:115   GACCCAAACGAACAAGCCCUA   135 Target Full Sequence	1.0	Sequence 4929 from Patent EP2985353	NA	coding protein	psRNATarget
BT065119.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   |*|||||||||||||||||*= targets:492   CACCAAAACGAACAAGCCCAG   512 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676135.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   |*|||||||||||||||||*= targets:2889   CACCAAAACGAACAAGCCCAG   2909 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/LRR-repeat protein 3-like (LOC103650561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***|||||||||||||||||* targets:3623   GAGCAAAACGAACAAGCCCUU   3643 Target Full Sequence	2.0	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU948930.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***||||||*||||||||||| targets:451   GAGCAAAACCAACAAGCCCUA   471 Target Full Sequence	2.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***||||||*||||||||||| targets:3163   GAGCAAAACCAACAAGCCCUA   3183 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   ***||||||*||||||||||| targets:3310   GAGCAAAACCAACAAGCCCUA   3330 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT017369.1	ncRNA:21   GAGGUUUUGCUUGUUCGGGAU   1   *****|||||||||||||||| targets:227   AGAAUAAACGAACAAGCCCUA   247 Target Full Sequence	3.0	Zea mays clone EL01N0324H03.c mRNA sequence	NA	coding protein	psRNATarget