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BaseInfo

ncRNA ID	novel_zma_miR2001
Species	Zea mays
Class	miRNA
Genome position	Chr1:287593330-287593471 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR5451004;SRR5451005
Length	24
Mature sequence(if miRNA)	119 - AGAUCUAGAUCUAACGGACCAAAA - 142
Stem-loop(if miRNA)	--                 A    C GU       GUAAUUG    UUG     GGC        AAA     A   UUGGUCUGUUAGAUCUA GAUC A  CGUAUGU       UGGU   UUAGG   UUUUUUAU   GCUAC U   ||||||||||||||||| |||| |  |||||||       ||||   |||||   ||||||||   ||||| G   AACCAGGCAAUCUAGAU CUAG U  GCAUACG       AUCG   AAUUU   GGAGGGUG   UGGUG A AA                 -    A UG       -GUAUAA    -UA     --A        --G     G
Stem-loop sequence	UUGGUCUGUUAGAUCUAAGAUCCAGUCGUAUGUGUAAUUGUGGUUUGUUAGGGGCUUUUUUAUAAAGCUACAUGAGGUGGUGGUGGGAGGAUUUAAAUGCUAAAUAUGGCAUACGGUUAGAUCUAGAUCUAACGGACCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551156.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   ||||||||||||||||=||||||| targets:743   UUUUGGUCCGUUAGAUUUAGAUCU   766 Target Full Sequence	1.5	PREDICTED: Zea mays SKP1-like protein 1B (LOC103652383), mRNA	NA	coding protein	psRNATarget
HI410097.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |||||*|||||||||||||||||* targets:50   UUUUGAUCCGUUAGAUCUAGAUCC   73 Target Full Sequence	2.0	Sequence 8222 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242227.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |||||*|||||||||||||||||* targets:50   UUUUGAUCCGUUAGAUCUAGAUCC   73 Target Full Sequence	2.0	Sequence 8222 from Patent EP2985353	NA	coding protein	psRNATarget
JB170558.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |||||*|||||||||||||||||* targets:50   UUUUGAUCCGUUAGAUCUAGAUCC   73 Target Full Sequence	2.0	Sequence 8222 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |||||*|||||||||||||||||* targets:677   UUUUGAUCCGUUAGAUCUAGAUCC   700 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |||||*|||||||||||||||||* targets:859   UUUUGAUCCGUUAGAUCUAGAUCC   882 Target Full Sequence	2.0	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
HI402951.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
JB163419.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
HI402958.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
JB163412.1	ncRNA:24   AAAACCAGGCAAUCUAGAUCUAGA   1   |*|||||=|||||||||||||||* targets:8   UCUUGGUUCGUUAGAUCUAGAUCC   31 Target Full Sequence	2.0	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget