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BaseInfo

ncRNA ID	novel_zma_miR2000
Species	Zea mays
Class	miRNA
Genome position	Chr1:286163041-286163091 [+]
Reference genome	RefGen_v4
Source	SRR2089711;SRR2287031
Length	24
Mature sequence(if miRNA)	1 - GCCAGAUCGCGGACCGUCCGGCCC - 24
Stem-loop(if miRNA)	-   AU       C    --     GC CAG  CGCGGAC GUCC  GGCCC || |||  ||||||| ||||  ||||C CG GUC  GCGCCUG CAGG  CCGGU   U   -C       C    CG
Stem-loop sequence	GCCAGAUCGCGGACCGUCCGGCCCCUGGCCGCGGACCGUCCGCGCCUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ104830.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:42   GGGCCGGACGGUCCGCGACCUGGC   65 Target Full Sequence	1.5	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:27   GGGCCGGACGGUCCGCGACCUGGC   50 Target Full Sequence	1.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:212   GGGCCGGACGGUCCGCGACCUGGC   235 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:348   GGGCCGGACGGUCCGCGACCUGGC   371 Target Full Sequence	1.5	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:649   GGGCCGGACGGUCCGCGACCUGGC   672 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||= targets:720   GGGCCGGACGGUCCGCGACCUGGU   743 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   ||||||||||||||||||*||||| targets:684   GGGCCGGACGGUCCGCGACCUGGC   707 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   *||||||||||||||||*|||||* targets:1418   CGGCCGGACGGUCCGCGCUCUGGG   1441 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   *||||||||||||||||*|||||* targets:1500   CGGCCGGACGGUCCGCGCUCUGGG   1523 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
JB170256.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   |||||*||||||||||||*||||| targets:39   GGGCCAGACGGUCCGCGACCUGGC   62 Target Full Sequence	2.5	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
HI409795.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   |||||*||||||||||||*||||| targets:39   GGGCCAGACGGUCCGCGACCUGGC   62 Target Full Sequence	2.5	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   |||||*||||||||||||*||||| targets:39   GGGCCAGACGGUCCGCGACCUGGC   62 Target Full Sequence	2.5	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   |||||*||||||||||||*||||| targets:448   GGGCCAGACGGUCCGCGACCUGGC   471 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
XM_020540955.1	ncRNA:24   CCCGGCCUGCCAGGCGCUAGACCG   1   |*||||||||||||||||*||||| targets:947   GAGCCGGACGGUCCGCGACCUGGC   970 Target Full Sequence	1.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC103632613), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CCCG-GCCUGCCAGGCGCUAGACCG   1   *|||-||||||||||||||*||||| targets:1679   AGGCGCGGACGGUCCGCGACCUGGC   1703 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CCCG-GCCUGCCAGGCGCUAGACCG   1   *|||-||||||||||||||*||||| targets:1679   AGGCGCGGACGGUCCGCGACCUGGC   1703 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   CCCG-GCCUGCCAGGCGCUAGACCG   1   *||=-||||||||||||||*||||| targets:22   AGGUGCGGACGGUCCGCGACCUGGC   46 Target Full Sequence	1.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
XM_020538776.1	ncRNA:24   CCCG-GCCUGCCAGGCGCUAGACCG   1   *|||-=|||||||||||||*||||* targets:1676   AGGCGUGGACGGUCCGCGAACUGGG   1700 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538775.1	ncRNA:24   CCCG-GCCUGCCAGGCGCUAGACCG   1   *|||-=|||||||||||||*||||* targets:1774   AGGCGUGGACGGUCCGCGAACUGGG   1798 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X1, mRNA	NA	coding protein	psRNATarget